.pre-commit-config.yaml

repos:
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v4.4.0  # Use the ref you want to point at
    hooks:
    -   id: trailing-whitespace
    -   id: end-of-file-fixer
    -   id: check-yaml
    -   id: check-case-conflict
    -   id: check-merge-conflict
    -   id: check-symlinks
    -   id: check-json
    -   id: debug-statements

  # - repo: https://github.com/charliermarsh/ruff-pre-commit
  #   # Ruff version.
  #   rev: 'v0.0.206'
  #   hooks:
  #     - id: ruff
  #       args: ["--force-exclude", "--ignore", "E501", "--ignore", "E402", "--ignore",  "F401"]

  - repo: https://github.com/psf/black
    rev: 22.12.0
    hooks:
      - id: black
        # It is recommended to specify the latest version of Python
        # supported by your project here, or alternatively use
        # pre-commit's default_language_version, see
        # https://pre-commit.com/#top_level-default_language_version
        language_version: python3.12

  - repo: https://github.com/snakemake/snakefmt
    rev: v0.8.4 # Replace by any tag/version ≥0.2.4 : https://github.com/snakemake/snakefmt/releases
    hooks:
      - id: snakefmt
        args: []