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peak_call_method can be False Python package #666: Commit 0682616 pushed by alsmith151
March 21, 2024 18:24 33m 13s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 18:24 33m 13s
Fix logic in get_fastqc_files function Python package #665: Commit e820801 pushed by alsmith151
March 21, 2024 18:15 34m 17s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 18:15 34m 17s
add get_fastqc_files. corrects single vs paired Python package #664: Commit 42cbce5 pushed by alsmith151
March 21, 2024 18:11 12m 18s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 18:11 12m 18s
Add full QC report to QCFiles class Python package #663: Commit 3e387a3 pushed by alsmith151
March 21, 2024 18:04 29m 39s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 18:04 29m 39s
Update default values for remove_pcr_duplicates and make_heatmaps Python package #662: Commit 0cfd011 pushed by alsmith151
March 21, 2024 17:58 4m 1s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 17:58 4m 1s
set apptainer prefix for snakemake Python package #661: Commit 6f182bc pushed by alsmith151
March 21, 2024 17:56 4m 8s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 17:56 4m 8s
Update heatmap.smk to handle unscaled bigwigs Python package #660: Commit dd98efd pushed by alsmith151
March 21, 2024 17:21 36m 14s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 17:21 36m 14s
Fix typo in get_scale_method parameter name Python package #659: Commit a707b38 pushed by alsmith151
March 21, 2024 17:15 30m 40s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 17:15 30m 40s
Add full QC report to seqnado_output Python package #658: Commit 1ae16db pushed by alsmith151
March 21, 2024 17:15 4m 23s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 17:15 4m 23s
heatmaps should use normalised bigwigs if present Python package #657: Commit 128a3c0 pushed by alsmith151
March 21, 2024 16:55 4m 20s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 16:55 4m 20s
Update file path for writing normalization factors Python package #656: Commit e2e3d23 pushed by alsmith151
March 21, 2024 16:51 37m 10s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 16:51 37m 10s
Update DESeq2 configuration file to include rjson package and output … Python package #655: Commit c7eb167 pushed by alsmith151
March 21, 2024 16:40 31m 25s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 16:40 31m 25s
Add conditional check for vst function Python package #654: Commit 2ad91f0 pushed by alsmith151
March 21, 2024 16:24 31m 5s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 16:24 31m 5s
Add deseq2 column to design file Python package #653: Commit 4d2e88f pushed by alsmith151
March 21, 2024 16:13 31m 12s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 16:13 31m 12s
Delete fastq files Python package #652: Commit 2d207d5 pushed by alsmith151
March 21, 2024 15:46 14m 34s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 15:46 14m 34s
Add options to STAR command for RNA assay Python package #651: Commit 638b69e pushed by alsmith151
March 21, 2024 15:09 17m 20s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 15:09 17m 20s
Add pyranges as a dependency Python package #650: Commit f11487d pushed by alsmith151
March 21, 2024 12:35 16m 6s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 12:35 16m 6s
Refactor NormGroups class to handle subset columns in design Python package #649: Commit 08384f4 pushed by alsmith151
March 21, 2024 12:07 15m 32s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 21, 2024 12:07 15m 32s
Update fastq files Python package #648: Commit 4531907 pushed by alsmith151
March 20, 2024 18:33 2m 51s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 20, 2024 18:33 2m 51s
Refactor snakefile_atac and snakefile_chip Python package #647: Commit f586403 pushed by alsmith151
March 20, 2024 17:11 11m 40s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 20, 2024 17:11 11m 40s
Add is_paired property to AssayIP and ExperimentIP classes, and updat… Python package #646: Commit 976f695 pushed by alsmith151
March 20, 2024 17:07 7m 26s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 20, 2024 17:07 7m 26s
Refactor test_pipelines.py to download and extract genome indices and… Python package #645: Commit fbda10a pushed by alsmith151
March 20, 2024 15:20 8m 8s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 20, 2024 15:20 8m 8s
Remove unused test files and fixtures Python package #644: Commit a6b39ef pushed by alsmith151
March 20, 2024 11:15 2m 41s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 20, 2024 11:15 2m 41s
Merge remote-tracking branch 'origin/add-test-data' into feat-split-u… Python package #643: Commit 9a783b0 pushed by alsmith151
March 18, 2024 13:16 10m 56s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 18, 2024 13:16 10m 56s
Add test_rna_size_factors.ipynb to .gitignore Python package #642: Commit 338e823 pushed by alsmith151
March 18, 2024 13:12 10m 5s feat-split-utils-into-separate-modules
feat-split-utils-into-separate-modules
March 18, 2024 13:12 10m 5s