library(txdbmaker)
-#> Loading required package: BiocGenerics
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-#> Attaching package: 'BiocGenerics'
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-#> colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
-#> get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
-#> match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
-#> Position, rank, rbind, Reduce, rownames, sapply, setdiff, table,
-#> tapply, union, unique, unsplit, which.max, which.min
-#> Loading required package: S4Vectors
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-#> findMatches
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-#> Loading required package: GenomeInfoDb
-#> Loading required package: IRanges
-#> Loading required package: GenomicRanges
-#> Loading required package: GenomicFeatures
-#> Loading required package: AnnotationDbi
-#> Loading required package: Biobase
-#> Welcome to Bioconductor
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-#> Vignettes contain introductory material; view with
-#> 'browseVignettes()'. To cite Bioconductor, see
-#> 'citation("Biobase")', and for packages 'citation("pkgname")'.
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-#> Attaching package: 'txdbmaker'
-#> The following objects are masked from 'package:GenomicFeatures':
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-#> browseUCSCtrack, getChromInfoFromBiomart, makeFDbPackageFromUCSC,
-#> makeFeatureDbFromUCSC, makePackageName, makeTxDb,
-#> makeTxDbFromBiomart, makeTxDbFromEnsembl, makeTxDbFromGFF,
-#> makeTxDbFromGRanges, makeTxDbFromUCSC, makeTxDbPackage,
-#> makeTxDbPackageFromBiomart, makeTxDbPackageFromUCSC,
-#> supportedMiRBaseBuildValues, supportedUCSCFeatureDbTables,
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# Create a list of `TxDb` objects from a list of `GRanges` objects
txdb_list <- lapply(yeast_annot, txdbmaker::makeTxDbFromGRanges)
txdb_list
@@ -744,7 +697,7 @@ The full scheme (SSD
#> # Genome: NA
#> # Nb of transcripts: 6631
#> # Db created by: txdbmaker package from Bioconductor
-#> # Creation time: 2024-07-25 09:05:44 +0000 (Thu, 25 Jul 2024)
+#> # Creation time: 2024-10-02 09:49:23 +0000 (Wed, 02 Oct 2024)
#> # txdbmaker version at creation time: 1.1.1
#> # RSQLite version at creation time: 2.3.7
#> # DBSCHEMAVERSION: 1.2
@@ -756,7 +709,7 @@ The full scheme (SSD
#> # Genome: NA
#> # Nb of transcripts: 5389
#> # Db created by: txdbmaker package from Bioconductor
-#> # Creation time: 2024-07-25 09:05:45 +0000 (Thu, 25 Jul 2024)
+#> # Creation time: 2024-10-02 09:49:23 +0000 (Wed, 02 Oct 2024)
#> # txdbmaker version at creation time: 1.1.1
#> # RSQLite version at creation time: 2.3.7
#> # DBSCHEMAVERSION: 1.2