From fd46350130e32f026ce41fc1b51d3866fed92ebd Mon Sep 17 00:00:00 2001 From: Tremayne Date: Mon, 12 Aug 2024 16:58:01 -0700 Subject: [PATCH 1/3] Update package.json gocam-viz --- package.json | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/package.json b/package.json index 9e9c6cfa..5c301f55 100644 --- a/package.json +++ b/package.json @@ -13,7 +13,7 @@ "@fortawesome/free-solid-svg-icons": "^6.5.2", "@fortawesome/react-fontawesome": "^0.2.2", "@geneontology/curie-util-es5": "^1.2.4", - "@geneontology/wc-gocam-viz": "1.0.0", + "@geneontology/wc-gocam-viz": "1.0.1-beta.2", "@geneontology/wc-ribbon-strips": "0.0.37", "@geneontology/wc-ribbon-table": "0.0.57", "@testing-library/jest-dom": "^5.16.1", From 4485efb587b0836c8fb32ecaed0a8dd10e6812a1 Mon Sep 17 00:00:00 2001 From: Scott Cain Date: Mon, 23 Sep 2024 15:34:06 -0700 Subject: [PATCH 2/3] fixing the missing redirect for many XB bigwig tracks --- cdk/amplify-production-stack.ts | 1 + cdk/amplify-stage-stack.ts | 1 + cdk/amplify-test-stack.ts | 1 + 3 files changed, 3 insertions(+) diff --git a/cdk/amplify-production-stack.ts b/cdk/amplify-production-stack.ts index d88e9091..0afa73ac 100644 --- a/cdk/amplify-production-stack.ts +++ b/cdk/amplify-production-stack.ts @@ -29,6 +29,7 @@ export class AmplifyProductionStack extends cdk.Stack { { source: '/jbrowsedata/XenBaseXLJBrowse/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/data/xl9_2/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/XenBaseData/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/RGDJBrowse/<*>', target: 'https://rgd.mcw.edu/jbrowse2/<*>', status: amplify.RedirectStatus.REWRITE }, + { source: '/jbrowsedata/XenBaseBigFtp/<*>', target: 'https://bigftp.xenbase.org/pub/xenbase/genomics/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein', target: 'https://www.alliancegenome.org/jbrowse/worms/protein/', status: amplify.RedirectStatus.PERMANENT_REDIRECT }, { source: '/jbrowse/worms/protein/', target: 'https://main.djgvd7iswt7yy.amplifyapp.com/', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein/<*>', target: 'https://main.djgvd7iswt7yy.amplifyapp.com/<*>', status: amplify.RedirectStatus.REWRITE }, diff --git a/cdk/amplify-stage-stack.ts b/cdk/amplify-stage-stack.ts index 702b80b8..dc9edafc 100644 --- a/cdk/amplify-stage-stack.ts +++ b/cdk/amplify-stage-stack.ts @@ -24,6 +24,7 @@ export class AmplifyStageStack extends cdk.Stack { { source: '/jbrowsedata/XenBaseXLJBrowse/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/data/xl9_2/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/XenBaseData/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/RGDJBrowse/<*>', target: 'https://rgd.mcw.edu/jbrowse2/<*>', status: amplify.RedirectStatus.REWRITE }, + { source: '/jbrowsedata/XenBaseBigFtp/<*>', target: 'https://bigftp.xenbase.org/pub/xenbase/genomics/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein', target: 'https://stage.alliancegenome.org/jbrowse/worms/protein/', status: amplify.RedirectStatus.PERMANENT_REDIRECT }, { source: '/jbrowse/worms/protein/', target: 'https://staging.djgvd7iswt7yy.amplifyapp.com/', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein/<*>', target: 'https://staging.djgvd7iswt7yy.amplifyapp.com/<*>', status: amplify.RedirectStatus.REWRITE }, diff --git a/cdk/amplify-test-stack.ts b/cdk/amplify-test-stack.ts index a13af5dc..772ee26e 100644 --- a/cdk/amplify-test-stack.ts +++ b/cdk/amplify-test-stack.ts @@ -25,6 +25,7 @@ export class AmplifyTestStack extends cdk.Stack { { source: '/jbrowsedata/XenBaseXLJBrowse/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/data/xl9_2/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/XenBaseData/<*>', target: 'https://jbrowse.xenbase.org/XenJBrowse/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowsedata/RGDJBrowse/<*>', target: 'https://rgd.mcw.edu/jbrowse2/<*>', status: amplify.RedirectStatus.REWRITE }, + { source: '/jbrowsedata/XenBaseBigFtp/<*>', target: 'https://bigftp.xenbase.org/pub/xenbase/genomics/<*>', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein', target: 'https://test.alliancegenome.org/jbrowse/worms/protein/', status: amplify.RedirectStatus.PERMANENT_REDIRECT }, { source: '/jbrowse/worms/protein/', target: 'https://main.djgvd7iswt7yy.amplifyapp.com/', status: amplify.RedirectStatus.REWRITE }, { source: '/jbrowse/worms/protein/<*>', target: 'https://main.djgvd7iswt7yy.amplifyapp.com/<*>', status: amplify.RedirectStatus.REWRITE }, From 3a9dc0ba0aa92053db100498808c13a75d9992d3 Mon Sep 17 00:00:00 2001 From: Christopher Tabone Date: Thu, 17 Oct 2024 15:25:55 -0300 Subject: [PATCH 3/3] Instance ID for 7_4_0 release. --- cdk/cdk-app.ts | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/cdk/cdk-app.ts b/cdk/cdk-app.ts index 702c4f1c..46cdad8b 100644 --- a/cdk/cdk-app.ts +++ b/cdk/cdk-app.ts @@ -20,7 +20,7 @@ new AmplifyALBStack(app, 'stage-alb-stack', { new AmplifyALBStack(app, 'test-alb-stack', { stackName: 'test-alb-stack', dnsName: 'test', - targetInstanceId: 'i-0cda8176961addcad', + targetInstanceId: 'i-08138c1f889f670ca', env: { region: process.env.CDK_DEFAULT_REGION, account: process.env.CDK_DEFAULT_ACCOUNT, @@ -30,7 +30,7 @@ new AmplifyALBStack(app, 'test-alb-stack', { new AmplifyALBStack(app, 'prod-alb-stack', { stackName: 'prod-alb-stack', dnsName: 'prod', - targetInstanceId: 'i-0cda8176961addcad', + targetInstanceId: 'i-08138c1f889f670ca', env: { region: process.env.CDK_DEFAULT_REGION, account: process.env.CDK_DEFAULT_ACCOUNT,