poetry.lock

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name = "arrow"
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description = "Better dates & times for Python"
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cov = ["attrs[tests]", "coverage-enable-subprocess", "coverage[toml] (>=5.3)"]
dev = ["attrs[docs,tests]"]
docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope.interface"]
tests = ["attrs[tests-no-zope]", "zope.interface"]
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description = "Internationalization utilities"
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description = "Screen-scraping library"
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soupsieve = ">1.2"

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lxml = ["lxml"]

[[package]]
name = "certifi"
version = "2022.12.7"
description = "Python package for providing Mozilla's CA Bundle."
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[[package]]
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description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
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description = "Idiomatic conversion between URIs and compact URIs (CURIEs)."
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python-versions = ">=3.7"

[package.dependencies]
pytrie = "*"
requests = "*"

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bioregistry = ["bioregistry (>=0.5.136)"]
docs = ["sphinx", "sphinx-autodoc-typehints", "sphinx-automodapi", "sphinx-rtd-theme"]
fastapi = ["fastapi", "httpx"]
flask = ["flask"]
pandas = ["pandas"]
rdflib = ["rdflib"]
tests = ["coverage", "pytest"]

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name = "decorator"
version = "5.1.1"
description = "Decorators for Humans"
category = "main"
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python-versions = ">=3.5"

[[package]]
name = "deprecated"
version = "1.2.13"
description = "Python @deprecated decorator to deprecate old python classes, functions or methods."
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

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description = "Distribution utilities"
category = "main"
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python-versions = "*"

[[package]]
name = "docutils"
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description = "Docutils -- Python Documentation Utilities"
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

[[package]]
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python-versions = "*"

[[package]]
name = "et-xmlfile"
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description = "An implementation of lxml.xmlfile for the standard library"
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[[package]]
name = "filelock"
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description = "A platform independent file lock."
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docs = ["furo (>=2022.12.7)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"]
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description = "Validates fully-qualified domain names against RFC 1123, so that they are acceptable to modern bowsers"
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description = "Copy your docs directly to the gh-pages branch."
category = "main"
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python-versions = "*"

[package.dependencies]
python-dateutil = ">=2.8.1"

[package.extras]
dev = ["flake8", "markdown", "twine", "wheel"]

[[package]]
name = "graphviz"
version = "0.20.1"
description = "Simple Python interface for Graphviz"
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
dev = ["flake8", "pep8-naming", "tox (>=3)", "twine", "wheel"]
docs = ["sphinx (>=5)", "sphinx-autodoc-typehints", "sphinx-rtd-theme"]
test = ["coverage", "mock (>=4)", "pytest (>=7)", "pytest-cov", "pytest-mock (>=3)"]

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name = "greenlet"
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description = "Lightweight in-process concurrent programming"
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python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*"

[package.extras]
docs = ["Sphinx", "docutils (<0.18)"]
test = ["faulthandler", "objgraph", "psutil"]

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description = "Honey Badger reader - a generic file/url/string open and read tool"
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[[package]]
name = "idna"
version = "3.4"
description = "Internationalized Domain Names in Applications (IDNA)"
category = "main"
optional = false
python-versions = ">=3.5"

[[package]]
name = "imagesize"
version = "1.4.1"
description = "Getting image size from png/jpeg/jpeg2000/gif file"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "importlib-metadata"
version = "4.13.0"
description = "Read metadata from Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
zipp = ">=0.5"

[package.extras]
docs = ["furo", "jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)"]
perf = ["ipython"]
testing = ["flake8 (<5)", "flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"]

[[package]]
name = "isodate"
version = "0.6.1"
description = "An ISO 8601 date/time/duration parser and formatter"
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
six = "*"

[[package]]
name = "isoduration"
version = "20.11.0"
description = "Operations with ISO 8601 durations"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
arrow = ">=0.15.0"

[[package]]
name = "jinja2"
version = "3.1.2"
description = "A very fast and expressive template engine."
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
MarkupSafe = ">=2.0"

[package.extras]
i18n = ["Babel (>=2.7)"]

[[package]]
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description = "JavaScript unobfuscator and beautifier."
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python-versions = "*"

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editorconfig = ">=0.12.2"
six = ">=1.13.0"

[[package]]
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version = "0.1.9"
description = "Python library for denormalizing nested dicts or json objects to tables and back"
category = "main"
optional = false
python-versions = ">=3.7.0"

[package.dependencies]
click = "*"
pyyaml = "*"

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name = "jsonasobj"
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description = "JSON as python objects"
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python-versions = "*"

[[package]]
name = "jsonasobj2"
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description = "JSON as python objects - version 2"
category = "main"
optional = false
python-versions = ">=3.6"

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hbreader = "*"

[[package]]
name = "jsonpatch"
version = "1.32"
description = "Apply JSON-Patches (RFC 6902)"
category = "main"
optional = false
python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"

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[[package]]
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version = "1.5.3"
description = "A final implementation of JSONPath for Python that aims to be standard compliant, including arithmetic and binary comparison operators and providing clear AST for metaprogramming."
category = "main"
optional = false
python-versions = "*"

[package.dependencies]
decorator = "*"
ply = "*"
six = "*"

[[package]]
name = "jsonpointer"
version = "2.3"
description = "Identify specific nodes in a JSON document (RFC 6901)"
category = "main"
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python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"

[[package]]
name = "jsonschema"
version = "4.17.3"
description = "An implementation of JSON Schema validation for Python"
category = "main"
optional = false
python-versions = ">=3.7"

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attrs = ">=17.4.0"
fqdn = {version = "*", optional = true, markers = "extra == \"format\""}
idna = {version = "*", optional = true, markers = "extra == \"format\""}
isoduration = {version = "*", optional = true, markers = "extra == \"format\""}
jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format\""}
pyrsistent = ">=0.14.0,<0.17.0 || >0.17.0,<0.17.1 || >0.17.1,<0.17.2 || >0.17.2"
rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format\""}
rfc3987 = {version = "*", optional = true, markers = "extra == \"format\""}
uri-template = {version = "*", optional = true, markers = "extra == \"format\""}
webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\""}

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format = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3987", "uri-template", "webcolors (>=1.11)"]
format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]

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name = "linkml"
version = "1.5.0"
description = "Linked Open Data Modeling Language"
category = "main"
optional = false
python-versions = ">=3.7.6,<4.0.0"

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click = ">=7.0"
graphviz = ">=0.10.1"
hbreader = "*"
isodate = ">=0.6.0"
jinja2 = ">=3.1.0"
jsonasobj2 = ">=1.0.3,<2.0.0"
jsonschema = {version = ">=4.0.0", extras = ["format"]}
linkml-dataops = "*"
linkml-runtime = ">=1.5.0"
myst-parser = "*"
openpyxl = "*"
parse = "*"
prefixcommons = ">=0.1.7"
prefixmaps = ">=0.1.3,<0.2.0"
pydantic = "*"
pyjsg = ">=0.11.6"
pyshex = ">=0.7.20"
pyshexc = ">=0.8.3"
python-dateutil = "*"
pyyaml = "*"
rdflib = ">=6.0.0"
requests = ">=2.22"
sphinx-click = "*"
sphinx-rtd-theme = "*"
sqlalchemy = ">=1.4.31"
tox = ">=3.25.1,<4.0.0"
watchdog = ">=0.9.0"

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docs = ["furo[docs] (>=2022.9.29,<2023.0.0)", "sphinx", "sphinxcontrib-mermaid[docs] (>=0.7.1,<0.8.0)"]

[[package]]
name = "linkml-dataops"
version = "0.1.0"
description = "LinkML Data Operations API"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
jinja2 = "*"
jsonpatch = "*"
jsonpath-ng = "*"
linkml-runtime = ">=1.1.6"
"ruamel.yaml" = "*"

[[package]]
name = "linkml-runtime"
version = "1.5.0"
description = "Runtime environment for LinkML, the Linked open data modeling language"
category = "main"
optional = false
python-versions = ">=3.7.6,<4.0.0"

[package.dependencies]
click = "*"
curies = ">=0.4.0,<0.5.0"
deprecated = "*"
hbreader = "*"
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prefixmaps = ">=0.1.4"
pyyaml = "*"
rdflib = ">=6.0.0"
requests = "*"

[[package]]
name = "markdown"
version = "3.3.7"
description = "Python implementation of Markdown."
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}

[package.extras]
testing = ["coverage", "pyyaml"]

[[package]]
name = "markdown-it-py"
version = "2.2.0"
description = "Python port of markdown-it. Markdown parsing, done right!"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
mdurl = ">=0.1,<1.0"

[package.extras]
benchmarking = ["psutil", "pytest", "pytest-benchmark"]
code-style = ["pre-commit (>=3.0,<4.0)"]
compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"]
linkify = ["linkify-it-py (>=1,<3)"]
plugins = ["mdit-py-plugins"]
profiling = ["gprof2dot"]
rtd = ["attrs", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]

[[package]]
name = "markupsafe"
version = "2.1.2"
description = "Safely add untrusted strings to HTML/XML markup."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "mdit-py-plugins"
version = "0.3.5"
description = "Collection of plugins for markdown-it-py"
category = "main"
optional = false
python-versions = ">=3.7"

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markdown-it-py = ">=1.0.0,<3.0.0"

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rtd = ["attrs", "myst-parser (>=0.16.1,<0.17.0)", "sphinx-book-theme (>=0.1.0,<0.2.0)"]
testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]

[[package]]
name = "mdurl"
version = "0.1.2"
description = "Markdown URL utilities"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "mergedeep"
version = "1.3.4"
description = "A deep merge function for 🐍."
category = "main"
optional = false
python-versions = ">=3.6"

[[package]]
name = "mkdocs"
version = "1.4.2"
description = "Project documentation with Markdown."
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
click = ">=7.0"
colorama = {version = ">=0.4", markers = "platform_system == \"Windows\""}
ghp-import = ">=1.0"
importlib-metadata = {version = ">=4.3", markers = "python_version < \"3.10\""}
jinja2 = ">=2.11.1"
markdown = ">=3.2.1,<3.4"
mergedeep = ">=1.3.4"
packaging = ">=20.5"
pyyaml = ">=5.1"
pyyaml-env-tag = ">=0.1"
watchdog = ">=2.0"

[package.extras]
i18n = ["babel (>=2.9.0)"]
min-versions = ["babel (==2.9.0)", "click (==7.0)", "colorama (==0.4)", "ghp-import (==1.0)", "importlib-metadata (==4.3)", "jinja2 (==2.11.1)", "markdown (==3.2.1)", "markupsafe (==2.0.1)", "mergedeep (==1.3.4)", "packaging (==20.5)", "pyyaml (==5.1)", "pyyaml-env-tag (==0.1)", "typing-extensions (==3.10)", "watchdog (==2.0)"]

[[package]]
name = "mkdocs-material"
version = "9.1.5"
description = "Documentation that simply works"
category = "main"
optional = false
python-versions = ">=3.7"

[package.dependencies]
colorama = ">=0.4"
jinja2 = ">=3.0"
markdown = ">=3.2"
mkdocs = ">=1.4.2"
mkdocs-material-extensions = ">=1.1"
pygments = ">=2.14"
pymdown-extensions = ">=9.9.1"
regex = ">=2022.4.24"
requests = ">=2.26"

[[package]]
name = "mkdocs-material-extensions"
version = "1.1.1"
description = "Extension pack for Python Markdown and MkDocs Material."
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "mkdocs-mermaid2-plugin"
version = "0.6.0"
description = "A MkDocs plugin for including mermaid graphs in markdown sources"
category = "main"
optional = false
python-versions = ">=3.5"

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jsbeautifier = "*"
mkdocs = ">=1.0.4"
mkdocs-material = "*"
pymdown-extensions = ">=8.0"
pyyaml = "*"
requests = "*"
setuptools = ">=18.5"

[[package]]
name = "more-itertools"
version = "9.1.0"
description = "More routines for operating on iterables, beyond itertools"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "myst-parser"
version = "1.0.0"
description = "An extended [CommonMark](https://spec.commonmark.org/) compliant parser,"
category = "main"
optional = false
python-versions = ">=3.7"

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docutils = ">=0.15,<0.20"
jinja2 = "*"
markdown-it-py = ">=1.0.0,<3.0.0"
mdit-py-plugins = ">=0.3.4,<0.4.0"
pyyaml = "*"
sphinx = ">=5,<7"

[package.extras]
code-style = ["pre-commit (>=3.0,<4.0)"]
linkify = ["linkify-it-py (>=1.0,<2.0)"]
rtd = ["ipython", "pydata-sphinx-theme (==v0.13.0rc4)", "sphinx-autodoc2 (>=0.4.2,<0.5.0)", "sphinx-book-theme (==1.0.0rc2)", "sphinx-copybutton", "sphinx-design2", "sphinx-pyscript", "sphinx-tippy (>=0.3.1)", "sphinx-togglebutton", "sphinxext-opengraph (>=0.7.5,<0.8.0)", "sphinxext-rediraffe (>=0.2.7,<0.3.0)"]
testing = ["beautifulsoup4", "coverage[toml]", "pytest (>=7,<8)", "pytest-cov", "pytest-param-files (>=0.3.4,<0.4.0)", "pytest-regressions", "sphinx-pytest"]
testing-docutils = ["pygments", "pytest (>=7,<8)", "pytest-param-files (>=0.3.4,<0.4.0)"]

[[package]]
name = "openpyxl"
version = "3.1.2"
description = "A Python library to read/write Excel 2010 xlsx/xlsm files"
category = "main"
optional = false
python-versions = ">=3.6"

[package.dependencies]
et-xmlfile = "*"

[[package]]
name = "packaging"
version = "23.0"
description = "Core utilities for Python packages"
category = "main"
optional = false
python-versions = ">=3.7"

[[package]]
name = "parse"
version = "1.19.0"
description = "parse() is the opposite of format()"
category = "main"
optional = false
python-versions = "*"

[[package]]
name = "platformdirs"
version = "3.2.0"
description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "main"
optional = false
python-versions = ">=3.7"

[package.extras]
docs = ["furo (>=2022.12.7)", "proselint (>=0.13)", "sphinx (>=6.1.3)", "sphinx-autodoc-typehints (>=1.22,!=1.23.4)"]
test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.2.2)", "pytest-cov (>=4)", "pytest-mock (>=3.10)"]

[[package]]
name = "pluggy"
version = "0.13.1"
description = "plugin and hook calling mechanisms for python"
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