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Visualizing networks/junctions #462

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ShrimpCryptid opened this issue Oct 23, 2024 · 1 comment
Open

Visualizing networks/junctions #462

ShrimpCryptid opened this issue Oct 23, 2024 · 1 comment
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needs-detail Needs UX or implementation details. new feature New feature or request research Needs follow-up/research with users.

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@ShrimpCryptid
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ShrimpCryptid commented Oct 23, 2024 •
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Use Case

Discussion with @Leigh-Harris! EMT is interested in segmenting and annotating Z01 (tight junctions), or cell-cell junctions. Is there a way TFE can visualize this?

Example visualizations:

  • Showing junctions as vertices
  • Visualizing length/distance (vertex-to-vertex connectivity)
  • Visualizing junctions/vertices moving past each others as cells move

Other examples of network proteins:

  • Myosin (which is both junctional but also cytoplasmic)

Acceptance Criteria

Please describe how you know this is done

Details

Please provide any helpful specifications
@ShrimpCryptid ShrimpCryptid added new feature New feature or request needs-detail Needs UX or implementation details. research Needs follow-up/research with users. labels Oct 23, 2024
@ShrimpCryptid
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TBD since early 3D exploration is more useful to explore in AGAVE or VV, according to Leigh

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