CV.tex

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  \href{https://www.utoronto.ca/}{The University of Toronto} 
  \\ \href{http://ccbr.utoronto.ca/donnelly-centre-cellular-and-biomolecular-research}{The Donnelly Centre (6th Floor)}
  \\ 160 College St, Toronto, ON
  \\ M5S 3E1, Canada
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    \faPhone & 647-540-1388 \\
    \faEnvelope & \href{mailto:matthew.mcfee@mail.utoronto.ca}{matthew.mcfee@mail.utoronto.ca} \\
    \faLinkedinSquare & \href{https://www.linkedin.com/in/mattcmcfee}{https://www.linkedin.com/in/mattcmcfee}\\
    \faGithub & \href{https://github.com/allcatsaregrey}{https://www.github.com/allcatsaregrey}\\
    %\faGlobe & \href{https://www.gilbert-lab.com/}{ https://www.gilbert-lab.com/} \\
    %\faGlobe & \href{https://www.kaggle.com/mattmcfee}{https://www.% kaggle.com/mattmcfee}
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\section*{\textbf{Personal}}

\begin{itemize}
\item Date of Birth: January 11, 1994
\item Citizenship: Canadian
\item Languages: English (Fluent), Spanish (Basic)
\end{itemize}

\section*{\textbf{Education}}

\begin{itemize}

\item PhD Molecular Genetics (Computational Biology Track), The University of Toronto,\\
January 2021 - January 2025 (Expected)

\item MASc Biomedical Engineering, The University of Toronto,\\
September 2018 - November 2020
\end{itemize}

\begin{itemize}
  \item BASc Chemical and Biological Engineering, The University of British Columbia,\\
  September 2012 - April 2017
\end{itemize}

\section*{\textbf{Fellowships \& Awards}}
\begin{itemize}
    %\item TOeP Scholarship Award, 2020
    \item  \href{http://toep.utoronto.ca/}{NSERC CREATE Training Program in Organ-on-a-Chip Engineering and Entrepreneurship (TOeP) Fellowship}, September 2018 - Present
    \item \href{http://toep.utoronto.ca/}{NSERC CREATE Training Program in Organ-on-a-Chip Engineering and Entrepreneurship (TOeP) Scholarship Award}, October 2020
    \item Barbara \& Frank Milligan Graduate Fellowship Award, November 2018
    \item \href{https://www.gg.ca/en/honours/recipients/116-80953}{Governor General's Bronze Medal}, June 2012
\end{itemize}

\section*{\textbf{Additional Education \& Certifications}}

\begin{itemize}
    \item SciNet Data Science Certificate, June 2019 - August 2020
    \\The University of Toronto
    \\Toronto, ON
    \\Selected Courses: Neural Network Programming, Linux Shell Scripting, Machine Learning with Python, Introduction to Relational Databases
    %\item DataCamp Statement of Accomplishment, January 2020 - February 2020
    %\\Data Scientist with Python
    %\\Selected Courses: Data Manipulation with Pandas, Introduction to Data Visualization with Seaborn, Unsupervised Learning in Python, Cluster Analysis in Python
    %\item SciNet Summer School Certificate, June 2019
    %\\The University of Toronto
    %\\Toronto, ON
    %\\Advanced Linux, Python, Machine Learning
\end{itemize}

\section*{\textbf{Research Interests}}
\begin{itemize}
\item The applications of machine learning in biology and healthcare, computational biology, modelling of biological processes/systems, bioengineering, biophysics
%\item Machine learning, large scale data analysis, the application of machine learning to improve society
\end{itemize} 

\section*{\textbf{Research Experience}}

\subsection*{Graduate Theses}
\begin{itemize}
    
    \item TBD (Supervisor: Dr. Philip Kim), January 2021 - January 2025 (Expected)

    \item Adapting Muscle Endogenous Repair Assay (MEndR) for Industry and Academic Adoption (Supervisor: Dr. Penney Gilbert), September 2018 - November 2020 \\
    \\
    \tiny{Committee: Drs. Molly Shoichet, Sunita Mathur \\
           External examiner: Dr. Rodrigo Fernandez-Gonzalez}
\end{itemize}

\subsection*{Undergraduate Thesis}

\begin{itemize}
\item Derivation of Blood-Brain Barrier Cells from Induced Pluripotent Stem Cells and Blood Brain Barrier Formation Kinetics for the Testing of Penetrability of Anti-neurodegenerative Drugs (Supervisor: Dr. Vikramaditya G. Yadav), September 2015 - April 2017 
\end{itemize}

\subsection*{Research Exchanges}
\begin{itemize}
\item Visiting Researcher, Laboratory of Quantitative Exercise Biology (Collaborator/Supervisor: Dr. David C. Clarke), Simon Fraser University, December 2020 
\end{itemize}

\subsection*{Capstone Design Project}

\begin{itemize}
\item Anaerobic Digestion of Brewery Spent Grain for the Production of Bio-methane, September 2016 - April 2017
\\ Industry Advisors: Postmark Brewing, Quadrogen Power Systems Inc.
\end{itemize}

\section*{\textbf{Teaching Experience}}
\begin{itemize}
    \item BME1479 - Biostatistics, Winter 2020
    \\Institute of Biomaterials \& Biomedical Engineering
    \\The University  of Toronto
    \\Toronto, ON
    \\Instructor: Dr. Julie Audet PhD, P. Eng.
    \\Position: Teaching Assistant
    \item Bachelor of Education Practicum (Physics), Summer 2015
    \\ The University of British Columbia, Vancouver School Board
    \\ Vancouver, BC
    \\ Instructor/Supervisor: Mr. Adam Klaassen
    \\ Position: Teaching Assistant
\end{itemize}

\section*{\textbf{Professional Experience}}

\begin{itemize}
\item Boston Scientific, March 2018 - June 2018
\\Vancouver, BC
\\Position: Manufacturing Associate (track to Manufacturing Engineer)
\end{itemize}

\section*{\textbf{Journal Articles}}

In Progress:
\begin{enumerate}
\item E. Jacques*, \textbf{M. McFee*}, A. Fard, S. Davoudi, B. Xu, A.P. McGuigan \& P.M. Gilbert, "Muscle endogenous repair assay adaptions for industry and academic adoption", in preparation for submission
\end{enumerate}

In Review:
\begin{enumerate}
\item B. Xu*, S. Davoudi*, J.L. Cardenas, \textbf{M. McFee}, E. Jacques, C.Y. Chin, A. Fard, M. Ebrahimi, M.A. Bakooshli, R. Marcellus, K. Tung, H. Ahn, H.J. Ginsberg, A.P. McGuigan \& P.M. Gilbert, "An in vitro functional assay to predict in vivo muscle stem cell mediated repair", Accepted by Cell Stem Cell (October 2020)

%\item S. Barsky, A. Govette, M. Holowaty, L. O'Brien,  \textbf{M. McFee}, M.A. Bakooshli \& D. Moore, "(Run) Over the hill: exercising to prevent age-related denervation", submitted to Journal of Physiology (April 2020)
%\item R. Vaez Ghaemi, M. McFee \& V. G. Yadav, "Exploration of Novel Materials for Studying Cell Deposition and Tissue Assemblage", submitted to Langmuir
\end{enumerate}

Published:
\begin{enumerate}
    \item R. Vaez Ghaemi, I. L. Co, \textbf{M. McFee} \& V. G. Yadav, "Brain Organoids: A New, Transformative Investigational Tool for Neuroscience Research", published by Advanced Biosystems (October 2018)
    
    {\tiny Note: * indicates equal contribution to authorship.}
\end{enumerate}



\section*{\textbf{Conferences \& Seminars}}

\begin{itemize}
\item November 2020 \textbf{Oral Presentation.} "MEndR: A System For Screening and Validating Muscle Repair Enhancing Drugs" Centre for Research and Applications in Fluidic Technologies (CRAFT) Symposium. Toronto, ON (Placed 3rd)
\item June 2020 \textbf{Oral Presentation.} "Making muscle! How we build miniature muscles to test repair enhancing drugs" The University of Toronto Engineering Research Conference (UTERC). Toronto, ON
\item May 2020 \textbf{Abstract Presentation.} "Adaping a Novel Muscle Endogenous Repair Assay For Industry and Academic Adoption" Muscle Health Awareness Day (YorkU). Toronto, ON
\item December 2019 \textbf{Student Seminar.} "MEndR Adaptions to Facilitate Industry and Academic Adoption" Institute of Biomaterials \& Biomedical Engineering Student Seminar Series. Toronto, ON
\href{https://bcregmed.ca/wp-content/uploads/2018/05/BCRegMed-Symposium-Abstract-Booklet_May-9-2018_Final.pdf}{\item May 2018 \textbf{Poster Presentation.} "Brain organoids: A transformative, new research tool for neuroscience research" BCRegMed Symposium. Vancouver, BC}
 \href{https://biomaterials.ca/static/abstracts/view/114124}{\item May 2017 \textbf{Poster Presentation.} "Towards Layer-by-layer Manufacturing of Engineered Tissues" Canadian Biomaterials Society Conference. Winnipeg, MB}
\item March 2017 \textbf{Poster Presentation.} "Engineering Cerebroids for the Testing of Anti-neurodegeneration Drugs" AICHe Pacific Northwest Regional Conference. Corvalis, OR
\end{itemize}

\section*{\textbf{Volunteering \& Mentorship}}
\begin{itemize}
    \item Engineering Mentoring Program, October 2020 - Present
    \\ The University of British Columbia
    \\ Vancouver, BC
    \\ Position: Mentor
    \\ Students: Justin Kuan (BASc Biomedical Engineering and Bioinformatics), Josh Goguen (BASc Biomedical Engineering)
    \item Graduate \& Life Sciences Education Shadowing Program, February 2019 - July 2019
    \\The University of Toronto
    \\Toronto, ON
    \\Position: Graduate Mentor 
    \item The University of Toronto Skule Alumni Mentorship Program, 2019
    \\Toronto, ON
    \\Position: Student Mentee
    \\Mentor: Dr. Adam Grossman, PhD (Data Scientist)
    \\Company: Praedicat 
\end{itemize}

\section*{\textbf{Entrepreneurial \& Additional Professional Experience}}

\begin{itemize}
\item H. Lorenzo, August 2015 - December 2017
\\Los Angeles, CA
\\Position: Seasonal Model and Stylist
\\Highlights: \href{https://www.highsnobiety.com/2016/09/10/raf-simons-fw16-collection-h-lorenzo-editorial/}{Raf Simons FW16}, \href{https://hypebeast.com/2017/12/julius-spring-summer-2018-collection-h-lorenzo-pop-up}{JULIUS SS17}, \href{https://hypebeast.com/2018/1/not-applicable-selfridges-michele-lamy}{N/A x Selfridges "Lamyland"}
\item BAD BOY, January 2017 - March 2017
\\Vancouver, BC
\\Position: Co-founder, Model, and Sales
\\{\tiny Notes: (1) Name change to "Stranger Showroom." (2) Closed as of March 2019 (3) Currently operating as of May 2020}
\end{itemize}

%\section*{Programming Languages \& Relevant Software}
%\begin{itemize}
%\item Python (Data Science, machine Learning, general purpose)
%\item R (Data visualization, statistical analysis)
%\item C (General purpose)
%\item \LaTeX
%\item JMP 
%\item ImageJ
%\end{itemize}

\section*{\textbf{Programming Languages \& Software}}
\begin{itemize}
    \item \textit{Primary Languages:} \textbf{Python}, Scheme
    \item \textit{Secondary Languages:} C, R
    \item \textit{Software:} \LaTeX, Emacs, Bash, Git, ImageJ, JMP, Inkscape, Aspen Plus
    \item \textit{Libraries:} Pandas, NumPy, scikit-learn, TensorFlow, Keras, Seaborn, ggplot2, tidyverse, org-mode
    \item \textit{Operating Systems}: Ubuntu, Debian GNU/Linux, FreeBSD\\\\
    \tiny{Note: Bolded languages are my most frequently used languages}
\end{itemize}

\section*{\textbf{Recreational Interests}}
\begin{itemize}
\item \textit{Academic:} Graph theory
\item \textit{Non-Academic:} Powerlifting, heavy metal music, fashion design, horror cinema
\end{itemize}

\section*{\textbf{References}}

\begin{multicols}{3}
\begin{itemize}
    \item Dr. Penney Gilbert, PhD
    \\Relationship: Thesis Advisor
    \\\faPhone & 416-978-2501
    \\\faEnvelope & \href{mailto: penney.gilbert@.utoronto.ca}{penney.gilbert@utoronto.ca}
    \item Dr. Alison McGuigan, PhD
    \\Relationship: Research collaborator, Co-author
    \\\faPhone & 416-978-7552
    \\\faEnvelope & \href{mailto:alison.mcguigan@utoronto.ca}{alison.mcguigan@utoronto.ca}
     \item Dr. Julie Audet, PhD, P. Eng.
    \\Relationship: Course Instructor
    \\\faPhone & 416-978-1713
    \\\faEnvelope & \href{mailto:julie.audet@utoronto.ca}{julie.audet@utoronto.ca}
    %\item Dr. Daniel Moore, PhD
    %\\Relationship: Instructor, Co-author
    %\\\faPhone & 416-946-4088
    %\\\faEnvelope & %\href{mailto:dr.moore@utoronto.ca}{dr.moore@utoronto.ca}
\end{itemize}
\end{multicols}

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