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integrate deformetrica registrations with nat #3

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jefferis opened this issue Jan 19, 2016 · 4 comments
Open

integrate deformetrica registrations with nat #3

jefferis opened this issue Jan 19, 2016 · 4 comments
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@jefferis
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I guess that would be enhances nat, but might need to be imports because of the generic.

Gist would probably be to define a type like deformetricareg that referenced the registration folder on disk and then define an xformpoints.deformetricareg method. Question is whether we would need to import nat::xformpoints

Might also be worth thinking again about an xyzmatrix<-.neuronlist method to avoid repeated calls to ShootAndFlow3.

@jefferis jefferis self-assigned this Jan 19, 2016
@alexanderbates
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Added code that achieves xyzmatrix<-.neuronlist, to deal with neuronlists for shootflow.neuronlist. Didn't make a specific "xyzmatrix<-.neuronlist" function, figured you'd push one to nat at some point.

@jefferis
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Added code that achieves xyzmatrix<-.neuronlist, to deal with neuronlists for shootflow.neuronlist.

Great.

Didn't make a specific "xyzmatrix<-.neuronlist" function, figured you'd push one to nat at some point.

Quite right.

Do push and I can review

@alexanderbates
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Done. Took 2 hours to "otherside" all the catmaid neurons with good somas (4,005) on my machine, running one core

@jefferis
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See #5 for my initial tidying.

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