conversion of raw Polyester/RSEM FASTA output to SAM in genomic coordinates
-g -i -o -s -t [-r ]
Arguments:
g/--gff annotation from which reads are simulated
i/--index Fasta index of the genome from which reads where simulated
o/--output name for the output SAM alignment
r/--rsemi Base name of the RSEM-prepared reference. Required if the RSEM mode is enabled
s/--single single-end reads
t/--type Type of the simulator used. Options are [rsem,polyester]