ci.yaml

name: CI

# Enable Buildkit and let compose use it to speed up image building
env:
  DOCKER_BUILDKIT: 1
  COMPOSE_DOCKER_CLI_BUILD: 1
  CONDA_ENV_NAME: clim-recal
  # CONDA_ENV_PATH: conda-lock.yml
  CONDA_ENV_PATH: .conda-linux-64.lock
  MIN_PYTHON_VERSION: 3.12
  PYTHON_MODULE_FOLDER: python/
  COVERAGE_SVG_FOLDER: docs/assets/
  COVERAGE_SVG_FILE_NAME: coverage.svg
  # replace below with references to previous config lines
  COVERAGE_SVG_PATH: docs/assets/coverage.svg
  GH_PAGE_PATH: _gh-page

on:
  pull_request:
    branches: ['main',]
    paths-ignore: ['docs/**']

  push:
    branches: ['main', 'crop-cli']
    paths-ignore: ['docs/**']

concurrency:
  group: ${{ github.head_ref || github.run_id }}
  cancel-in-progress: true

permissions:
  contents: write

jobs:
  linter:
    runs-on: ubuntu-latest
    steps:
      - name: Checkout Code Repository
        uses: actions/checkout@main

      - name: Set up Python
        uses: actions/setup-python@main
        with:
          python-version: ${{ env.MIN_PYTHON_VERSION }}

      - name: Run pre-commit
        uses: pre-commit/action@main

      - name: Update pre-commit
        uses: pre-commit-ci/lite-action@main
        if: always()

  pytest:
    runs-on: ubuntu-latest
    defaults:
      run:
        shell: bash -el {0}

    steps:
      - name: Checkout Code Repository
        uses: actions/checkout@main

      - name: Build Conda Environment
        uses: conda-incubator/setup-miniconda@v3
        with:
          activate-environment: ${{ env.CONDA_ENV_NAME }}
          environment-file: ${{ env.CONDA_ENV_PATH }}
          auto-activate-base: false
          miniforge-version: latest
          use-mamba: true

      - name: Run Python Tests
        # The first line below may be temporary,
        # see this solution:
        # https://github.com/pyenv/pyenv/issues/2625
        run: |
          mamba install libsqlite --force-reinstall
          mamba run -n ${{ env.CONDA_ENV_NAME }} --cwd python pytest -m "not darwin and not mount"
        shell: bash -el {0}

      # - name: Copy test coverage results
      #   run: |
      #     cp ${{ env.PYTHON_MODULE_FOLDER }}${{ env.COVERAGE_SVG_PATH }} ${{ env.COVERAGE_SVG_FOLDER }}

      - name: Archive coverage svg
        uses: actions/upload-artifact@v3
        with:
          name: coverage-badge
          path: ${{ env.COVERAGE_SVG_PATH }}

  docs:
    needs: [linter, pytest]
    runs-on: ubuntu-latest
    steps:
      - name: Check out repository
        uses: actions/checkout@v4

      - name: Download coverage svg
        uses: actions/download-artifact@v3
        with:
          name: coverage-badge
          path: ${{ env.GH_PAGE_PATH }}${{ env.COVERAGE_SVG_PATH }}

      - name: Set up Quarto
        uses: quarto-dev/quarto-actions/setup@v2

      - name: Build Conda Environment
        uses: conda-incubator/setup-miniconda@v3
        with:
          activate-environment: ${{ env.CONDA_ENV_NAME }}
          environment-file: ${{ env.CONDA_ENV_PATH }}
          auto-activate-base: false
          miniforge-version: latest

      - name: Run `quartodoc`
        shell: bash -el {0}
        run: |
          mamba run -n ${{ env.CONDA_ENV_NAME }} quartodoc build

      - name: Install Python and Dependencies
        uses: actions/setup-python@v4
        with:
          python-version: '3.12'
          cache: 'pip'

      - name: Install gdal and local libraries
        run: |
          sudo apt-add-repository ppa:ubuntugis/ubuntugis-unstable
          sudo apt-get update
          sudo apt-get install gdal-bin libgdal-dev
          pip install ./python

      - name: Render and Publish
        uses: quarto-dev/quarto-actions/publish@v2
        with:
          target: gh-pages
        env:
          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

  # The below raises a code 137 error on `GitHub` Actions

  # docker:
  #   needs: [linter, pytest]
  #   runs-on: ubuntu-latest
  #   steps:
  #   - uses: actions/checkout@main
  #
  #   - name: Build and Test with Root permission
  #     run: |
  #       docker compose build jupyter
  #       docker compose up jupyter --detach
  #       docker compose exec jupyter bash -c "conda run -n ${{ env.CONDA_ENV_NAME }} --cwd python pytest"
  #
  #   - name: Clean-up
  #     run: docker compose down