_site.yml

name: EEB313H1 Theoretical Ecology and Reproducible Quantitative Methods in R
output_dir: _site
exclude:
- DESCRIPTION
- LICENSE
new_session: true
navbar:
  title: EEB313H1
  left:
  - text: Syllabus
    icon: fa-map-o
    href: index.html
  - text: Lectures
    icon: fa-book
    menu:
    - text: 'Sept. 10: Intro to course, programming, RStudio, and R Markdown'
      href: lec01-introduction.html
    - text: 'Sept. 12: Assignment, vectors, functions'
      href: lec02-basic-r.html
    - text: 'Sept. 17: Data frames, intro to dplyr'
      href: lec03-basic-r.html
    - text: 'Sept. 19: Data wrangling in dplyr, ggplot, tidy data'
      href: lec04-dplyr.html
    - text: 'Sept. 24: More dplyr and ggplot'
      href: lec05-dplyr.html
    - text: 'Sept. 26: Exploratory data analysis'
      href: lec06-exploratory-data-analysis.html
    - text: 'Oct. 01: Linear models and statistical modelling'
      href: lec07-linear-modelling.html
    - text: 'Oct. 03: Mixed effects models'
      href: lec08-linear-mixed-effects-models.html
    - text: 'Oct. 08: Model Selection'
      href: lec09-model-selection.html
    - text: 'Oct. 10: Multivariate stats'
      href: lec10-multivariate-stats.html
    - text: 'Oct. 15: Spatial stats'
      href: lec11-spatial-stats.html
    - text: 'Oct. 17: Simulating data: Randomization tests'
      href: lec12-randomization-tests.html
    - text: 'Oct. 22 & 24: Mathematical models in EEB'
      href: lec13-theory.html
    - text: 'Oct. 29: Datasets, hypotheses, begin projects'
      href: lec14-datasets.html
    - text: 'Oct. 29 (cont.): Collaborating with GitHub'
      href: lec15-git-projects.html
    - text: 'Oct. 31: Project work (no lesson)'
    - text: 'Nov. 12: Project work (no lesson)'
    - text: 'Nov. 14: Project work (no lesson)'
    - text: 'Nov. 19: Project work (no lesson)'
    - text: 'Nov. 21: Project work (no lesson)'
    - text: 'Nov. 26: Project work (no lesson)'
    - text: 'Nov. 28: Project work (no lesson)'
    - text: 'Dec. 03: Project work (no lesson)'
    - text: 'Dec. 05: Group presentations (no lesson)'
  - text: Assignments
    icon: fa-book
    menu:
    - text: Assignment 1
      href: assignment-01.html
    - text: Assignment 2
      href: assignment-02.html
    - text: Assignment 3
      href: assignment-03.html
    - text: Assignment 4
      href: assignment-04.html
    - text: Assignment 5
      href: assignment-05.html
    - text: Assignment 6
      href: assignment-06.html
    - text: Assignment 7
      href: assignment-07.html
    - text: Assignment 8
      # href: assignment-08.html
    - text: Final project
      # href: assignment-final.html
  - text: Resources and FAQ
    icon: fa-question
    href: resources.html
  - text: About
    icon: fa-info
    href: about.html
  right:
  - icon: fa-bars
    menu:
    - text: Contact
      icon: fa-envelope
      href: mailto:ahmed.hasan@mail.utoronto.ca
    - text: GitHub
      icon: fa-github
      href: https://github.com/uoftcoders/rcourse

output:
  html_document:
    toc: yes
    toc_depth: 4
    toc_float:
      collapsed: no
      smooth_scroll: no
    include:
      in_header:
      - _includes/header.html
      - _includes/style.html
      after_body: _includes/footer.html
    theme: lumen
    highlight: haddock
    mathjax: https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML
    lib_dir: site_libs
    self_contained: no