From ef44b786337ae20a863f1e76af61beb602be5245 Mon Sep 17 00:00:00 2001 From: a-slide Date: Fri, 26 Nov 2021 09:01:26 +0000 Subject: [PATCH] Update citation --- NanoCount/__init__.py | 2 +- README.md | 6 +++--- docs/index.md | 4 ++-- meta.yaml | 4 ++-- mkdocs.yml | 2 +- setup.py | 2 +- versipy.yaml | 7 +++++-- versipy_history.txt | 1 + 8 files changed, 16 insertions(+), 12 deletions(-) diff --git a/NanoCount/__init__.py b/NanoCount/__init__.py index b09c403..4522215 100755 --- a/NanoCount/__init__.py +++ b/NanoCount/__init__.py @@ -1,7 +1,7 @@ # -*- coding: utf-8 -*- __name__ = "NanoCount" -__version__ = "1.0.0.post3" +__version__ = "1.0.0.post4" __description__ = "NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads" __url__ = "https://github.com/a-slide/NanoCount/" __licence__ = "MIT" diff --git a/README.md b/README.md index 7b964e1..fbb28a4 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# NanoCount v1.0.0.post3 +# NanoCount v1.0.0.post4 ![NanoCount](./docs/pictures/NanoCount.png) @@ -15,7 +15,7 @@ **NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads** -Full documentation is available at https://adrienleger.com/NanoCount/ +Full documentation is available at https:// a-slide.github.io/nanocount/ --- @@ -33,7 +33,7 @@ Thank you The repository is archived at Zenodo. If you use NanoCount please cite as follow: -Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004 +Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129 ### licence diff --git a/docs/index.md b/docs/index.md index 2ea1385..abf1e04 100644 --- a/docs/index.md +++ b/docs/index.md @@ -1,4 +1,4 @@ -# Welcome to NanoCount v1.0.0.post3 documentation +# Welcome to NanoCount v1.0.0.post4 documentation [NanoCount](pictures/NanoCount.png) @@ -46,7 +46,7 @@ NanoCount -i aligned_reads.bam -o transcript_counts.tsv The repository is archived at Zenodo. If you use NanoCount please cite as follow: -Adrien Leger. (2020, January 28). a-slide/NanoCount. Zenodo. https://zenodo.org/badge/latestdoi/142873004 +Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129 ### licence diff --git a/meta.yaml b/meta.yaml index 5a383d0..4dc22e0 100644 --- a/meta.yaml +++ b/meta.yaml @@ -1,4 +1,4 @@ -{% set version = "1.0.0.post3" %} +{% set version = "1.0.0.post4" %} {% set name = "NanoCount" %} package: @@ -35,7 +35,7 @@ test: about: home: https://github.com/a-slide/NanoCount/ - doc_url: https://adrienleger.com/NanoCount/ + doc_url: https:// a-slide.github.io/nanocount/ license: MIT licence_url: https://mit-license.org/ summary: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads diff --git a/mkdocs.yml b/mkdocs.yml index 83936db..68b3a8e 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -2,7 +2,7 @@ site_name: NanoCount site_description: NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads site_author: Adrien Leger -site_url: https://adrienleger.com/NanoCount/ +site_url: https:// a-slide.github.io/nanocount/ # Repository repo_name: 'a-slide/NanoCount' diff --git a/setup.py b/setup.py index bd82618..f23c2fb 100755 --- a/setup.py +++ b/setup.py @@ -11,7 +11,7 @@ setup( name="NanoCount", description="NanoCount estimates transcripts abundance from Oxford Nanopore *direct-RNA sequencing* datasets, using an expectation-maximization approach like RSEM, Kallisto, salmon, etc to handle the uncertainty of multi-mapping reads", - version="1.0.0.post3", + version="1.0.0.post4", long_description=long_description, long_description_content_type="text/markdown", url="https://github.com/a-slide/NanoCount/", diff --git a/versipy.yaml b/versipy.yaml index 69f2571..9df6007 100644 --- a/versipy.yaml +++ b/versipy.yaml @@ -5,7 +5,7 @@ version: a: null b: null rc: null - post: 3 + post: 4 dev: null managed_values: __package_name__: NanoCount @@ -31,7 +31,10 @@ managed_values: __classifiers_3__: 'Topic :: Scientific/Engineering :: Bio-Informatics' __classifiers_4__: 'License :: OSI Approved :: MIT License' __classifiers_5__: 'Programming Language :: Python :: 3' - __citation__: Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, gkab1129, https://doi.org/10.1093/nar/gkab1129 + __citation__: Josie Gleeson, Adrien Leger, Yair D J Prawer, Tracy A Lane, Paul J + Harrison, Wilfried Haerty, Michael B Clark, Accurate expression quantification + from nanopore direct RNA sequencing with NanoCount, Nucleic Acids Research, 2021;, + gkab1129, https://doi.org/10.1093/nar/gkab1129 managed_files: .versipy/setup.py: setup.py .versipy/meta.yaml: meta.yaml diff --git a/versipy_history.txt b/versipy_history.txt index 8a6577a..8fc9588 100644 --- a/versipy_history.txt +++ b/versipy_history.txt @@ -21,3 +21,4 @@ 2021-10-27 09:39:27.221554 1.0.0.post1 minor doc change 2021-10-27 23:26:41.943187 1.0.0.post2 main doc update 2021-10-27 23:40:29.979747 1.0.0.post3 main doc update +2021-11-26 09:01:25.733973 1.0.0.post4 Update citation