diff --git a/01-HemaScope_installation_tutorial.Rmd b/01-HemaScope_installation_tutorial.Rmd index c71c6dc..d6f7bf3 100644 --- a/01-HemaScope_installation_tutorial.Rmd +++ b/01-HemaScope_installation_tutorial.Rmd @@ -46,24 +46,24 @@ conda install python=3.9.12 - From conda ``` -conda install -c conda-forge r-devtools=2.4.5 -conda install -c conda-forge r-Seurat=4.3.0.1 -conda install -c conda-forge r-Rfast2=0.1.5.1 -conda install -c conda-forge r-hdf5r=1.3.10 -conda install -c conda-forge r-ggpubr=0.6.0 -conda install pwwang::r-seuratwrappers -conda install -c bioconda bioconductor-monocle=2.28.0 -conda install -c bioconda bioconductor-slingshot=2.8.0 -conda install -c bioconda bioconductor-GSVA=1.48.2 -conda install -c bioconda bioconductor-org.Mm.eg.db=3.17.0 -conda install -c bioconda bioconductor-org.Hs.eg.db=3.17.0 -conda install -c bioconda bioconductor-scran=1.28.1 -conda install -c bioconda bioconductor-AUCell=1.22.0 -conda install -c bioconda bioconductor-RcisTarget=1.20.0 -conda install -c bioconda bioconductor-GENIE3=1.24.0 -conda install -c bioconda bioconductor-biomaRt=2.56.1 -conda install -c bioconda r-velocyto.r=0.6 -#conda install -c bioconda bioconductor-limma=3.56.2 +conda install -c conda-forge r-devtools=2.4.5 -y +conda install -c conda-forge r-Seurat=4.3.0.1 -y +conda install -c conda-forge r-Rfast2=0.1.5.1 -y +conda install -c conda-forge r-hdf5r=1.3.10 -y +conda install -c conda-forge r-ggpubr=0.6.0 -y +conda install pwwang::r-seuratwrappers -y +conda install -c bioconda bioconductor-monocle=2.28.0 -y +conda install -c bioconda bioconductor-slingshot=2.8.0 -y +conda install -c bioconda bioconductor-GSVA=1.48.2 -y +conda install -c bioconda bioconductor-org.Mm.eg.db=3.17.0 -y +conda install -c bioconda bioconductor-org.Hs.eg.db=3.17.0 -y +conda install -c bioconda bioconductor-scran=1.28.1 -y +conda install -c bioconda bioconductor-AUCell=1.22.0 -y +conda install -c bioconda bioconductor-RcisTarget=1.20.0 -y +conda install -c bioconda bioconductor-GENIE3=1.24.0 -y +conda install -c bioconda bioconductor-biomaRt=2.56.1 -y +conda install -c bioconda r-velocyto.r=0.6 -y +#conda install -c bioconda bioconductor-limma=3.56.2 -y ``` - Enter the R language environment