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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(Co_occurenceScore)
export(GPT_annotation)
export(HemaScopeREnrichment)
export(Load_previous_results)
export(MERFISH_Cell_cycle)
export(MERFISH_Clustering)
export(MERFISH_Interaction)
export(MERFISH_Loading_Data)
export(MERFISH_SpatiallyVariableFeatures)
export(NicheCluster)
export(OpenXGR_SAG)
export(QC_MERFISH)
export(QC_Spatial)
export(QC_multiple_scRNASeq)
export(QC_single_scRNASeq)
export(cellCycle)
export(combinedViolinPlot)
export(convertHumanGene)
export(convertMouseGene)
export(doublerFinderwraper)
export(heterogeneity)
export(init_miniconda)
export(init_miniconda_stereo)
export(lineageScores)
export(mapDataToRef)
export(myImageFeaturePlot)
export(mySpatialFeaturePlot)
export(oColormap)
export(oDefineNet)
export(oGGnetwork)
export(oIG2TB)
export(oLayout)
export(oNetInduce)
export(oRDS)
export(oSubneterGenes)
export(oTB2IG)
export(prepareDataForScvelo)
export(python.path.ST)
export(python.path.sc)
export(python.path.stereo)
export(run_CellChat)
export(run_GSVA)
export(run_SCENIC)
export(run_cell_annotation)
export(run_monocle)
export(run_phateR)
export(run_slingshot)
export(scRNASeq_10x_pipeline)
export(sc_CNV)
export(st_10x_visium_pipeline)
export(st_CNV)
export(st_Cell_cycle)
export(st_Clustering)
export(st_Deconvolution)
export(st_Find_DEGs)
export(st_Interaction)
export(st_Loading_Data)
export(st_MERFISH_pipeline)
export(st_NicheAnalysis)
export(st_SpatiallyVariableFeatures)
export(st_stereo_pipeline)
export(stereo_Loading_Data)
import(RColorBrewer)
import(Rfast2)
import(Seurat)
import(SeuratDisk)
import(SeuratObject)
import(abcCellmap)
import(biomaRt)
import(copykat)
import(dplyr)
import(ggplot2)
import(igraph)
import(kableExtra)
import(knitr)
import(parallelDist)
import(patchwork)
import(pheatmap)
import(png)
import(reticulate)
import(rjson)
import(stringr)
import(transport)
importFrom(BiocGenerics,end)
importFrom(BiocGenerics,start)
importFrom(BiocGenerics,unlist)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,as.data.frame)
importFrom(GenomicRanges,distance)
importFrom(GenomicRanges,end)
importFrom(GenomicRanges,findOverlaps)
importFrom(GenomicRanges,mcols)
importFrom(GenomicRanges,seqnames)
importFrom(GenomicRanges,split)
importFrom(GenomicRanges,start)
importFrom(IRanges,IRanges)
importFrom(IRanges,pintersect)
importFrom(IRanges,reduce)
importFrom(IRanges,width)
importFrom(Matrix,Diagonal)
importFrom(Matrix,Matrix)
importFrom(Matrix,colSums)
importFrom(Matrix,rowSums)
importFrom(Matrix,summary)
importFrom(Matrix,t)
importFrom(XML,htmlTreeParse)
importFrom(XML,xmlGetAttr)
importFrom(curl,curl_download)
importFrom(dplyr,all_of)
importFrom(dplyr,any_vars)
importFrom(dplyr,arrange)
importFrom(dplyr,arrange_all)
importFrom(dplyr,as_tibble)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,count)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,filter)
importFrom(dplyr,filter_at)
importFrom(dplyr,group_by)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,progress_estimated)
importFrom(dplyr,pull)
importFrom(dplyr,reframe)
importFrom(dplyr,select)
importFrom(dplyr,select_at)
importFrom(dplyr,semi_join)
importFrom(dplyr,slice)
importFrom(dplyr,summarise)
importFrom(dplyr,transmute)
importFrom(dplyr,ungroup)
importFrom(dplyr,vars)
importFrom(forcats,fct_inorder)
importFrom(ggnetwork,geom_edges)
importFrom(ggnetwork,geom_nodes)
importFrom(ggnetwork,ggnetwork)
importFrom(ggraph,geom_conn_bundle)
importFrom(ggraph,geom_edge_arc)
importFrom(ggraph,geom_edge_diagonal)
importFrom(ggraph,geom_edge_elbow)
importFrom(ggraph,geom_edge_fan)
importFrom(ggraph,geom_edge_link)
importFrom(ggraph,geom_node_point)
importFrom(ggraph,geom_node_text)
importFrom(ggraph,get_con)
importFrom(ggraph,ggraph)
importFrom(ggraph,scale_edge_colour_distiller)
importFrom(ggraph,theme_graph)
importFrom(ggrepel,GeomTextRepel)
importFrom(ggrepel,geom_label_repel)
importFrom(ggrepel,geom_text_repel)
importFrom(magrittr,set_colnames)
importFrom(methods,is)
importFrom(osfr,osf_download)
importFrom(osfr,osf_ls_files)
importFrom(osfr,osf_retrieve_node)
importFrom(pbapply,pblapply)
importFrom(purrr,map)
importFrom(purrr,map2)
importFrom(purrr,map_dbl)
importFrom(purrr,map_int)
importFrom(purrr,map_lgl)
importFrom(readr,read_delim)
importFrom(stats,approx)
importFrom(stats,as.dendrogram)
importFrom(stats,as.dist)
importFrom(stats,coef)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,hclust)
importFrom(stats,integrate)
importFrom(stats,lm)
importFrom(stats,mad)
importFrom(stats,median)
importFrom(stats,na.omit)
importFrom(stats,order.dendrogram)
importFrom(stats,p.adjust)
importFrom(stats,pexp)
importFrom(stats,prcomp)
importFrom(stats,predict)
importFrom(stats,quantile)
importFrom(stats,sd)
importFrom(stats,splinefun)
importFrom(stats,t.test)
importFrom(stats,wilcox.test)
importFrom(stringr,str_c)
importFrom(stringr,str_count)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_split)
importFrom(stringr,str_to_title)
importFrom(tibble,as_tibble)
importFrom(tibble,deframe)
importFrom(tibble,enframe)
importFrom(tidyr,gather)
importFrom(tidyr,spread)