CSV2ACTDIST.txt

#!/bin/bash

# Set file paths
DATACSV=/scratch/groups/jzeitzer/UKBB/Data/Outputs/timeSeries
DATAACTDIST=/scratch/groups/jzeitzer/UKBB/Data/ACTDIST
DATACOMM=/scratch/groups/jzeitzer/UKBB/Data/Commands
CODEUKBB=/scratch/groups/jzeitzer/UKBB/Code/ukbb

# Export environment variables
export DATACSV
export DATACOMM
export CODEUKBB
export DATAACTDIST

# Make sure directories exist
mkdir -p $DATACSV
mkdir -p $DATACOMM
mkdir -p $DATAACTDIST

# Generate input files 
cd $DATACOMM
python3 /scratch/groups/jzeitzer/UKBB/Code/ukbb/chunkActDist.py

# 
cd $CODEUKBB
for FILE in $DATACOMM/inputActDist_*.txt; do
    echo ${FILE}
    export FILE
    sbatch -n 1 -t 2-00:00:00 --job-name=CSV2ACTDIST --wrap="bash /scratch/groups/jzeitzer/UKBB/Code/ukbb/runActDist.txt"
done