DESCRIPTION

Package: treeio
Title: Base Classes and Functions for Phylogenetic Tree Input and Output
Version: 1.31.0
Authors@R: c(
    person("Guangchuang", "Yu",     email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781")),
    person("Tommy Tsan-Yuk", "Lam", email = "tylam.tommy@gmail.com",   role = c("ctb", "ths")),
    person("Shuangbin", "Xu",       email = "xshuangbin@163.com",      role = "ctb",           comment = c(ORCID="0000-0003-3513-5362")),
    person("Bradley", "Jones",      email = "brj1@sfu.ca",             role = "ctb"),
    person("Casey", "Dunn",         email = "casey_dunn@brown.edu",    role = "ctb"),
    person("Tyler", "Bradley",      email = "tcb85@drexel.edu",        role = "ctb"),
    person("Konstantinos", "Geles", email = "konstantinos.geles@studenti.unicz.it", role = "ctb")
	  )
Description: 'treeio' is an R package to make it easier to import and store phylogenetic tree with associated data; and to link external data from different sources to phylogeny. It also supports exporting phylogenetic tree with heterogeneous associated data to a single tree file and can be served as a platform for merging tree with associated data and converting file formats.
Depends:
    R (>= 3.6.0)
Imports:
    ape,
    dplyr,
    jsonlite,
    magrittr,
    methods,
    rlang,
    stats,
    tibble,
    tidytree (>= 0.4.5),
    utils,
    yulab.utils (>= 0.1.6)
Suggests:
    Biostrings,
    cli,
    ggplot2,
    ggtree,
    igraph,
    knitr,
    rmarkdown,
    phangorn,
    prettydoc,
    purrr,
    testthat,
    tidyr,
    vroom,
    xml2,
    yaml
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://yulab-smu.top/contribution-tree-data/
BugReports: https://github.com/YuLab-SMU/treeio/issues
biocViews: Software, Annotation, Clustering, DataImport, DataRepresentation,
    Alignment, MultipleSequenceAlignment, Phylogenetics
RoxygenNote: 7.3.2