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ggsc 1.4.0

  • Bioconductor RELEASE_3_20 (2024-10-30, Wed)

ggsc 1.3.1

  • add plot_lisa_feature() (2024-09-06, #34, #39)
  • add geom_bgpoint() layer (2024-06-18, Tue, #24)

ggsc 1.2.0

  • Bioconductor RELEASE_3_19 (2024-05-01, Wed)

ggsc 1.1.4

  • add background outline of umap plot (2024-04-12, Fri, #22)

ggsc 1.1.3

  • support plotting pie for spatial data (2023-12-13, Wed, #18)
  • extract meta.data of Seurat object (2023-12-12, Tue, #17)

ggsc 1.1.2

  • add sc_dot() methods (2023-11-29, Wed, #15)
  • update vignette to link to the online docs (https://yulab-smu.top/ggsc)
  • add README.Rmd and README.md in github repo
  • optimization: retrieve embedding without FetchData (2023-11-27, Mon, #14)
  • bug fixed for Seurat object (2023-10-31, Tue, #12, #13)

ggsc 1.1.1

  • ignore the tissue section when image is not exist (2023-10-31, Tue, #12)
  • introduce joint to combine all features with joint.fun and speed up calculation of kde using RcppParallel (2023-10-25, Wed, #11)

ggsc 1.0.0

  • Bioconductor RELEASE_3_18 (2023-10-25, Wed)

ggsc 0.99.11

  • support density visualization for single and spatial transcriptomic data (2023-10-18, Wed)

ggsc 0.99.10

  • on Bioconductor (2023-10-16, Mon)
  • add \value session in the reexports.Rd (2023-10-15, Sun)
  • add package level man page and update vignette (2023-10-14, Sat)
  • add examples in Rd to satisfy BiocCheck (2023-09-18, Mon, #7)
  • sc_dim_count() function to generate a barplot from a dimension reduction plot (sc_dim() plot) to visualize the number of cells for each clusters (2023-09-13, Wed)
  • add 'biocViews' in DESCRIPTION required by Bioconductor

ggsc 0.99.0

  • compatible with 'SingleCellExperiment' (2023-09-05, Tue, #5)
  • using S4 OOP to reorganize the functions (2023-09-05, Tue, #4)
  • rename the package to 'ggsc' as there is a package called 'scplot' in CRAN
  • add H&E image to sc_spatial() (#3)

scplot 0.0.3

  • sc_spatial to visualize spatial features (2022-12-07, Wed)

scplot 0.0.2

  • sc_dim_geom_sub and sc_dim_sub (2022-12-03, Sat)
  • sc_dim_geom_ellipse to draw ellipse on sc_dim() (2022-12-02, Fri)

scplot 0.0.1

  • several functions implemented (2022-11-09, Wed)
    • sc_dim
    • sc_dim_geom_feature
    • sc_dim_geom_label
    • sc_feature
    • sc_geom_point
    • sc_violin