Error occurred while parsing the output of qiime2

[LaitingChoi]

Hi Shuangbin,

I met some troubles while parsing the output of qiime2. I've checked the output of qiime2 but I didn't find any reasons of the following error.

running:
otuqza="./table.qza"
taxaqzafile="./taxonomy.qza"
mapfile="./metadata.tsv"
mpse <- mp_import_qiime2(otuqza=otuqzafile, taxaqza=taxaqzafile, mapfilename=mapfile)
mpse

error:
Error in validityMethod():
! The number of tip labels of taxatree is not equal the number of otu in assays.
• Please check the taxatree or assays!
Run rlang::last_trace() to see where the error occurred.

rlang::last_trace()
<error/rlang_error>
Error in validityMethod():
! The number of tip labels of taxatree is not equal the number of otu in assays.
• Please check the taxatree or assays!

---

Backtrace:
▆

1. ├─methods (local) <stndrdGn>(<MPSE[,0]>)
2. ├─MicrobiotaProcess (local) <stndrdGn>(<MPSE[,0]>)
3. │ └─object %>% print()
4. ├─base::print(.)
5. └─MicrobiotaProcess:::print.MPSE(.)
6. └─MicrobiotaProcess:::print2.MPSE(...)

7. ├─x[seq_len(n), seq_len(min(1, ncol(x))), drop = FALSE]
   

8. └─x[seq_len(n), seq_len(min(1, ncol(x))), drop = FALSE]
   

9.   └─methods::validObject(nx)
   

10.     ├─methods (local) anyStrings(validityMethod(object))
    

11.     │ └─base::isTRUE(x)
    

12.     └─MicrobiotaProcess (local) validityMethod(object)
    

Run rlang::last_trace(drop = FALSE) to see 1 hidden frame.