pip install clipper --user

[jalalsiddiqui]

I installed clipper via pip install clipper however when I try to run it I get the following errors:

bash-4.2$ clipper
Traceback (most recent call last):
File "/users/PAS1143/osu8165/.local/bin/clipper", line 5, in
from clipper.src.peakfinder import call_main
File "/users/PAS1143/osu8165/.local/lib/python2.7/site-packages/clipper/src/peakfinder.py", line 16, in
import pybedtools
File "/users/PAS1143/osu8165/python_lib/lib/python3.5/site-packages/pybedtools-0.8.1-py3.5-linux-x86_64.egg/pybedtools/init.py", line 10, in
from .cbedtools import (
File "/users/PAS1143/osu8165/python_lib/lib/python3.5/site-packages/pybedtools-0.8.1-py3.5-linux-x86_64.egg/pybedtools/cbedtools.py", line 7, in
bootstrap()
File "/users/PAS1143/osu8165/python_lib/lib/python3.5/site-packages/pybedtools-0.8.1-py3.5-linux-x86_64.egg/pybedtools/cbedtools.py", line 6, in bootstrap
imp.load_dynamic(name,file)
ImportError: /users/PAS1143/osu8165/python_lib/lib/python3.5/site-packages/pybedtools-0.8.1-py3.5-linux-x86_64.egg/pybedtools/cbedtools.cpython-35m-x86_64-linux-gn
u.so: undefined symbol: _ZTINSt8ios_base7failureB5cxx11E

[algaebrown]

Hi Jalal,
Sorry for the late reply
it seems to be a problem in versions of pybedtools.

daler/pybedtools#302

can you recall how you solved the problem.

Thanks

[jalalsiddiqui]

I will check over my notes and get back to you