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IndexError: list index out of range #11

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toprakdog opened this issue Dec 13, 2023 · 0 comments
Open

IndexError: list index out of range #11

toprakdog opened this issue Dec 13, 2023 · 0 comments

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@toprakdog
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toprakdog commented Dec 13, 2023

Hi
First thank you very much for creating this great pipeline and sharing it with us. My question might be too basic, I might not explain it properly. sorry about it.
I am getting an index error for 2 samples out of 60. the error message is like this;

File "/home/seq2neo/miniconda3/envs/Seq2Neo/bin/seq2neo", line 33, in
sys.exit(load_entry_point('Seq2Neo==2.1', 'console_scripts', 'seq2neo')())
File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/main.py", line 13, in main
args[0].func.main(args[1])
File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/model/whole.py", line 120, in main
Integration(inputdir=filepath, outdir=filepath) # 整合转换
File "/home/seq2neo/miniconda3/envs/Seq2Neo/lib/python3.7/site-packages/seq2neo/lib/toTable.py", line 158, in Integration
HLA = file.split('
')[6].split('.')[0]
IndexError: list index out of range

Also, to explain it better, the pipeline successfully do all analyses it supposed to do, but it could not create these result files;

all.csv
cnn_results.csv
combination_mhci_tap.csv
mhci.csv
tap.csv

Once again, Thank you very much for your time.
Best regards

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