Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Multiple organisms alleles are missign from reference MHC sequences and IMGT-3D #97

Open
DarioMarzella opened this issue Sep 2, 2021 · 0 comments
Open

Multiple organisms alleles are missign from reference MHC sequences and IMGT-3D #97

DarioMarzella opened this issue Sep 2, 2021 · 0 comments
Labels
data_issue Templates and other reference data issues enhancement New feature or request

Comments

@DarioMarzella
Copy link
Collaborator

IMGT MHC database (https://www.ebi.ac.uk/ipd/mhc/) is missing Mouse (H2) alleles.
IMGT 3D db is missing multiple alleles (SLA, H2) and it reports them as "MH1". This causes issues when retrieving MHC reference sequences and predicting the anchors with netMHCpan.
@DarioMarzella DarioMarzella added enhancement New feature or request data_issue Templates and other reference data issues labels Sep 2, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
data_issue Templates and other reference data issues enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@DarioMarzella