From 2363afc9aee4d8491673185c942a21fc0dbc0e36 Mon Sep 17 00:00:00 2001
From: Wilfried Mercier <wilfried.mercier58@gmail.com>
Date: Mon, 4 Oct 2021 15:35:58 +0200
Subject: [PATCH] updated examples

---
 docs/API/index.html                     |  2 +-
 docs/_modules/SED/filters.html          | 14 ++++++++------
 docs/_modules/SED/sed.html              |  5 +++--
 docs/_modules/index.html                |  2 +-
 docs/_sources/examples/example1.rst.txt | 21 +++++++++++++++++----
 docs/_sources/examples/example2.rst.txt | 14 ++++++++++++++
 docs/_sources/index.rst.txt             |  2 +-
 docs/examples/example1.html             | 21 +++++++++++++++++----
 docs/examples/example2.html             | 16 +++++++++++++++-
 docs/genindex.html                      |  2 +-
 docs/index.html                         |  2 +-
 docs/py-modindex.html                   |  2 +-
 docs/search.html                        |  2 +-
 docs/searchindex.js                     |  2 +-
 14 files changed, 82 insertions(+), 25 deletions(-)

diff --git a/docs/API/index.html b/docs/API/index.html
index 53fa5a5..1fc47af 100644
--- a/docs/API/index.html
+++ b/docs/API/index.html
@@ -32,7 +32,7 @@
     <link rel="index" title="Index" href="../genindex.html" />
     <link rel="search" title="Search" href="../search.html" />
     <link rel="next" title="Catalogue classes" href="catalogues.html" />
-    <link rel="prev" title="Example 2: Resolved stellar mass map with LePhare" href="../examples/example2.html" /> 
+    <link rel="prev" title="Example 2: Resolved SFR map with LePhare from an output file" href="../examples/example2.html" /> 
 
 </head>
 
diff --git a/docs/_modules/SED/filters.html b/docs/_modules/SED/filters.html
index c47458b..be0196c 100644
--- a/docs/_modules/SED/filters.html
+++ b/docs/_modules/SED/filters.html
@@ -28,7 +28,6 @@
   <link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
   <link rel="stylesheet" href="../../_static/css/theme.min.css" type="text/css" />
   <link rel="stylesheet" href="../../_static/plot_directive.css" type="text/css" />
-  <link rel="stylesheet" href="../../_static/_static/custom.css" type="text/css" />
     <link rel="index" title="Index" href="../../genindex.html" />
     <link rel="search" title="Search" href="../../search.html" /> 
 
@@ -125,15 +124,15 @@
 </ul>
 <p class="caption" role="heading"><span class="caption-text">Examples</span></p>
 <ul>
-<li class="toctree-l1"><a class="reference internal" href="../../examples/example1.html">1. Generate a LePhare configuration file</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../examples/example2.html">2. Resolved stellar mass map with LePhare</a></li>
-<li class="toctree-l1"><a class="reference internal" href="../../examples/example3.html">3. Resolved SFR map from an already existing LePhare output file</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples/example1.html">1. Resolved stellar mass map with LePhare</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
 </ul>
 <p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../API/index.html">API</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="../../API/catalogues.html">Catalogue classes</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../API/filters.html">Filter classes</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../../API/misc/index.html">Miscellaneous</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../API/outputs.html">SED fitting code output classes</a></li>
 <li class="toctree-l2"><a class="reference internal" href="../../API/sed.html">SED classes</a></li>
 </ul>
@@ -504,6 +503,9 @@ <h1>Source code for SED.filters</h1><div class="highlight"><pre>
             <span class="c1"># Clean and add noise to variance map</span>
             <span class="n">data</span><span class="p">,</span> <span class="n">var</span>              <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">cleanAndNoise</span><span class="p">(</span><span class="n">filt</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">filt</span><span class="o">.</span><span class="n">var</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mask</span><span class="p">,</span> <span class="n">cleanMethod</span><span class="o">=</span><span class="n">cleanMethod</span><span class="p">,</span> <span class="n">texp</span><span class="o">=</span><span class="n">filt</span><span class="o">.</span><span class="n">texp</span><span class="p">,</span> <span class="n">texpFac</span><span class="o">=</span><span class="n">texpFac</span><span class="p">)</span>
            
+            <span class="n">test</span> <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">var</span><span class="p">)</span><span class="o">/</span><span class="n">data</span>
+            <span class="nb">print</span><span class="p">(</span><span class="n">test</span><span class="p">[</span><span class="o">~</span><span class="n">np</span><span class="o">.</span><span class="n">isnan</span><span class="p">(</span><span class="n">test</span><span class="p">)])</span> 
+           
             <span class="c1"># Scale data to have compatible values with LePhare for the flux</span>
             <span class="n">data</span><span class="p">,</span> <span class="n">var</span>              <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">scale</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">var</span><span class="p">,</span> <span class="n">meanMap</span><span class="p">,</span> <span class="n">factor</span><span class="o">=</span><span class="n">scaleFactor</span><span class="p">)</span>
             
@@ -518,7 +520,7 @@ <h1>Source code for SED.filters</h1><div class="highlight"><pre>
             <span class="n">data</span><span class="p">[</span><span class="n">mask0</span><span class="p">]</span>            <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
             <span class="n">var</span><span class="p">[</span> <span class="n">mask0</span><span class="p">]</span>            <span class="o">=</span> <span class="n">np</span><span class="o">.</span><span class="n">nan</span>
             
-            <span class="c1"># Compute std instead of variance</span>
+            <span class="c1"># Compute std instead of variance and go to mag</span>
             <span class="n">data</span><span class="p">,</span> <span class="n">std</span>              <span class="o">=</span> <span class="n">countToMag</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">var</span><span class="p">),</span> <span class="n">filt</span><span class="o">.</span><span class="n">zpt</span><span class="p">)</span>
             
             <span class="c1"># Cast back pixels with NaN values to -99 mag to specify they are not to be used in the SED fitting</span>
@@ -747,7 +749,7 @@ <h1>Source code for SED.filters</h1><div class="highlight"><pre>
             
         <span class="c1"># Add Poisson noise to the variance map</span>
         <span class="k">if</span> <span class="n">texp</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
-            <span class="n">var</span>   <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">poissonVar</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">texp</span><span class="o">=</span><span class="n">texp</span><span class="p">,</span> <span class="n">texpFac</span><span class="o">=</span><span class="n">texpFac</span><span class="p">)</span>
+            <span class="n">var</span>  <span class="o">+=</span> <span class="bp">self</span><span class="o">.</span><span class="n">poissonVar</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">texp</span><span class="o">=</span><span class="n">texp</span><span class="p">,</span> <span class="n">texpFac</span><span class="o">=</span><span class="n">texpFac</span><span class="p">)</span>
         
         <span class="k">return</span> <span class="n">data</span><span class="p">,</span> <span class="n">var</span></div>
     
diff --git a/docs/_modules/SED/sed.html b/docs/_modules/SED/sed.html
index 72dcbcc..566e8cc 100644
--- a/docs/_modules/SED/sed.html
+++ b/docs/_modules/SED/sed.html
@@ -122,6 +122,7 @@
 </ul>
 </li>
 </ul>
+<p class="caption" role="heading"><span class="caption-text">Examples</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../../examples/example1.html">1. Resolved stellar mass map with LePhare</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../../examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
@@ -533,9 +534,9 @@ <h1>Source code for SED.sed</h1><div class="highlight"><pre>
                      
                      <span class="s1">&#39;FIR_SCALE&#39;</span>      <span class="p">:</span> <span class="n">FloatProperty</span><span class="p">(</span><span class="s1">&#39;-1&#39;</span><span class="p">),</span>
                      
-                     <span class="s1">&#39;FIR_FREESCALE&#39;</span>  <span class="p">:</span> <span class="n">YESNO</span><span class="p">(</span><span class="n">YESNO</span><span class="o">.</span><span class="n">NO</span><span class="p">),</span>
+                     <span class="s1">&#39;FIR_FREESCALE&#39;</span>  <span class="p">:</span> <span class="n">EnumProperty</span><span class="p">(</span><span class="n">YESNO</span><span class="o">.</span><span class="n">NO</span><span class="p">),</span>
                      
-                     <span class="s1">&#39;FIR_SUBSTELLAR&#39;</span> <span class="p">:</span> <span class="n">YESNO</span><span class="p">(</span><span class="n">YESNO</span><span class="o">.</span><span class="n">NO</span><span class="p">),</span>
+                     <span class="s1">&#39;FIR_SUBSTELLAR&#39;</span> <span class="p">:</span> <span class="n">EnumProperty</span><span class="p">(</span><span class="n">YESNO</span><span class="o">.</span><span class="n">NO</span><span class="p">),</span>
                      
                      <span class="s1">&#39;PHYS_LIB&#39;</span>       <span class="p">:</span> <span class="n">PathProperty</span><span class="p">(</span><span class="s1">&#39;NONE&#39;</span><span class="p">),</span>
                      
diff --git a/docs/_modules/index.html b/docs/_modules/index.html
index 3772feb..ec27569 100644
--- a/docs/_modules/index.html
+++ b/docs/_modules/index.html
@@ -125,7 +125,7 @@
 <li class="toctree-l1"><a class="reference internal" href="../examples/example1.html">1. Resolved stellar mass map with LePhare</a></li>
 <li class="toctree-l1"><a class="reference internal" href="../examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
+<p class="caption" role="heading"><span class="caption-text">―――――――――――――――</span></p>
 <ul>
 <li class="toctree-l1"><a class="reference internal" href="../API/index.html">API</a><ul>
 <li class="toctree-l2"><a class="reference internal" href="../API/catalogues.html">Catalogue classes</a></li>
diff --git a/docs/_sources/examples/example1.rst.txt b/docs/_sources/examples/example1.rst.txt
index f3d48ee..972251d 100644
--- a/docs/_sources/examples/example1.rst.txt
+++ b/docs/_sources/examples/example1.rst.txt
@@ -8,7 +8,6 @@ We define the galaxy name, the bands used, their zeropoints and the absolute pat
 .. code-block:: python
 
     import os.path           as     opath
-    import matplotlib.pyplot as     plt
     from   astropy.io        import fits
     import SED
 
@@ -79,8 +78,22 @@ To generate a resolved stellar mass map we need to provide additional parameters
 
 .. code-block:: python
 
+    from   matplotlib        import rc
+    import matplotlib        as     mpl
+    import matplotlib.pyplot as     plt
+
     output.link(flist)
-    mass_star  = output.toImage('mass_med')
+    mass_star = output.toImage('mass_med')
+    
+    rc('font', **{'family': 'serif', 'serif': ['Times']})
+    rc('text', usetex=True)
+    mpl.rcParams['text.latex.preamble'] = r'\usepackage{newtxmath}'
+    rc('figure', figsize=(5, 4.5))
+    
+    ret = plt.imshow(mass_star.data, origin='lower', cmap='rainbow')
+    plt.xlabel('X [pixel]', size=13)
+    plt.ylabel('Y [pixel]', size=13)
     
-    plt.imshow(mass_star.data, origin='lower', cmap='rainbow')
-    plt.show()
\ No newline at end of file
+    cbar = plt.colorbar(ret, orientation='vertical', shrink=0.9)
+    cbar.set_label(r'$\log_{10} M_{\star}$ [M$_{\odot}$]', size=13)
+    plt.show()
diff --git a/docs/_sources/examples/example2.rst.txt b/docs/_sources/examples/example2.rst.txt
index f22d501..8e9ce28 100644
--- a/docs/_sources/examples/example2.rst.txt
+++ b/docs/_sources/examples/example2.rst.txt
@@ -49,7 +49,21 @@ As in :doc:`example 1 </examples/example1>`, we can now generate a resolved map
 
 .. code:: python
 
+    from   matplotlib        import rc
+    import matplotlib        as     mpl
+    import matplotlib.pyplot as     plt
+        
+    rc('font', **{'family': 'serif', 'serif': ['Times']})
+    rc('text', usetex=True)
+    mpl.rcParams['text.latex.preamble'] = r'\usepackage{newtxmath}'
+    rc('figure', figsize=(5, 4.5))
+
     sfr = output.toImage('sfr_med')
     
     plt.imshow(sfr.data, origin='lower', cmap='rainbow')
+    plt.xlabel('X [pixel]', size=13)
+    plt.ylabel('Y [pixel]', size=13)
+    
+    cbar = plt.colorbar(ret, orientation='vertical', shrink=0.9)
+    cbar.set_label(r'$\log_{10}$ SFR [M$_{\odot}$ yr$^{-1}$]', size=13)
     plt.show()
\ No newline at end of file
diff --git a/docs/_sources/index.rst.txt b/docs/_sources/index.rst.txt
index 7565b66..1a04497 100644
--- a/docs/_sources/index.rst.txt
+++ b/docs/_sources/index.rst.txt
@@ -35,7 +35,7 @@ We provide a few complete code examples below using the galaxy given in the :cod
     2. Resolved SFR map from an already existing LePhare output file <examples/example2>
 
 .. toctree::
-    :caption: ----------------------------------------
+    :caption: ―――――――――――――――
     :hidden:
     
     API/index
\ No newline at end of file
diff --git a/docs/examples/example1.html b/docs/examples/example1.html
index bf947c0..9892e29 100644
--- a/docs/examples/example1.html
+++ b/docs/examples/example1.html
@@ -157,7 +157,6 @@ <h1>Example 1: Generating a resolved stellar mass map with LePhare<a class="head
 <p>We start by importing <code class="code docutils literal notranslate"><span class="pre">os.path</span></code> module (useful to deal with paths between different OS), this library (<code class="code docutils literal notranslate"><span class="pre">SED</span></code>) and <code class="code docutils literal notranslate"><span class="pre">astropy.io.fits</span></code> to open the mask file.</p>
 <p>We define the galaxy name, the bands used, their zeropoints and the absolute path of the data and variance maps</p>
 <div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">os.path</span>           <span class="k">as</span>     <span class="nn">opath</span>
-<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span>     <span class="nn">plt</span>
 <span class="kn">from</span>   <span class="nn">astropy.io</span>        <span class="kn">import</span> <span class="n">fits</span>
 <span class="kn">import</span> <span class="nn">SED</span>
 
@@ -218,10 +217,24 @@ <h1>Example 1: Generating a resolved stellar mass map with LePhare<a class="head
 </pre></div>
 </div>
 <p>To generate a resolved stellar mass map we need to provide additional parameters. The simplest method is to link the filter list to the output object</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">output</span><span class="o">.</span><span class="n">link</span><span class="p">(</span><span class="n">flist</span><span class="p">)</span>
-<span class="n">mass_star</span>  <span class="o">=</span> <span class="n">output</span><span class="o">.</span><span class="n">toImage</span><span class="p">(</span><span class="s1">&#39;mass_med&#39;</span><span class="p">)</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span>   <span class="nn">matplotlib</span>        <span class="kn">import</span> <span class="n">rc</span>
+<span class="kn">import</span> <span class="nn">matplotlib</span>        <span class="k">as</span>     <span class="nn">mpl</span>
+<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span>     <span class="nn">plt</span>
+
+<span class="n">output</span><span class="o">.</span><span class="n">link</span><span class="p">(</span><span class="n">flist</span><span class="p">)</span>
+<span class="n">mass_star</span> <span class="o">=</span> <span class="n">output</span><span class="o">.</span><span class="n">toImage</span><span class="p">(</span><span class="s1">&#39;mass_med&#39;</span><span class="p">)</span>
+
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;font&#39;</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="s1">&#39;family&#39;</span><span class="p">:</span> <span class="s1">&#39;serif&#39;</span><span class="p">,</span> <span class="s1">&#39;serif&#39;</span><span class="p">:</span> <span class="p">[</span><span class="s1">&#39;Times&#39;</span><span class="p">]})</span>
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">,</span> <span class="n">usetex</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">mpl</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.latex.preamble&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="sa">r</span><span class="s1">&#39;\usepackage</span><span class="si">{newtxmath}</span><span class="s1">&#39;</span>
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;figure&#39;</span><span class="p">,</span> <span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mf">4.5</span><span class="p">))</span>
+
+<span class="n">ret</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">mass_star</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;lower&#39;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;rainbow&#39;</span><span class="p">)</span>
+<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;X [pixel]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
+<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Y [pixel]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
 
-<span class="n">plt</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">mass_star</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;lower&#39;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;rainbow&#39;</span><span class="p">)</span>
+<span class="n">cbar</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">(</span><span class="n">ret</span><span class="p">,</span> <span class="n">orientation</span><span class="o">=</span><span class="s1">&#39;vertical&#39;</span><span class="p">,</span> <span class="n">shrink</span><span class="o">=</span><span class="mf">0.9</span><span class="p">)</span>
+<span class="n">cbar</span><span class="o">.</span><span class="n">set_label</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\log_</span><span class="si">{10}</span><span class="s1"> M_{\star}$ [M$_{\odot}$]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
diff --git a/docs/examples/example2.html b/docs/examples/example2.html
index cf3089f..b749837 100644
--- a/docs/examples/example2.html
+++ b/docs/examples/example2.html
@@ -194,9 +194,23 @@ <h1>Example 2: Resolved SFR map with LePhare from an output file<a class="header
 </pre></div>
 </div>
 <p>As in <a class="reference internal" href="example1.html"><span class="doc">example 1</span></a>, we can now generate a resolved map for the median SFR</p>
-<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="n">sfr</span> <span class="o">=</span> <span class="n">output</span><span class="o">.</span><span class="n">toImage</span><span class="p">(</span><span class="s1">&#39;sfr_med&#39;</span><span class="p">)</span>
+<div class="highlight-python notranslate"><div class="highlight"><pre><span></span><span class="kn">from</span>   <span class="nn">matplotlib</span>        <span class="kn">import</span> <span class="n">rc</span>
+<span class="kn">import</span> <span class="nn">matplotlib</span>        <span class="k">as</span>     <span class="nn">mpl</span>
+<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span>     <span class="nn">plt</span>
+
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;font&#39;</span><span class="p">,</span> <span class="o">**</span><span class="p">{</span><span class="s1">&#39;family&#39;</span><span class="p">:</span> <span class="s1">&#39;serif&#39;</span><span class="p">,</span> <span class="s1">&#39;serif&#39;</span><span class="p">:</span> <span class="p">[</span><span class="s1">&#39;Times&#39;</span><span class="p">]})</span>
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;text&#39;</span><span class="p">,</span> <span class="n">usetex</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+<span class="n">mpl</span><span class="o">.</span><span class="n">rcParams</span><span class="p">[</span><span class="s1">&#39;text.latex.preamble&#39;</span><span class="p">]</span> <span class="o">=</span> <span class="sa">r</span><span class="s1">&#39;\usepackage</span><span class="si">{newtxmath}</span><span class="s1">&#39;</span>
+<span class="n">rc</span><span class="p">(</span><span class="s1">&#39;figure&#39;</span><span class="p">,</span> <span class="n">figsize</span><span class="o">=</span><span class="p">(</span><span class="mi">5</span><span class="p">,</span> <span class="mf">4.5</span><span class="p">))</span>
+
+<span class="n">sfr</span> <span class="o">=</span> <span class="n">output</span><span class="o">.</span><span class="n">toImage</span><span class="p">(</span><span class="s1">&#39;sfr_med&#39;</span><span class="p">)</span>
 
 <span class="n">plt</span><span class="o">.</span><span class="n">imshow</span><span class="p">(</span><span class="n">sfr</span><span class="o">.</span><span class="n">data</span><span class="p">,</span> <span class="n">origin</span><span class="o">=</span><span class="s1">&#39;lower&#39;</span><span class="p">,</span> <span class="n">cmap</span><span class="o">=</span><span class="s1">&#39;rainbow&#39;</span><span class="p">)</span>
+<span class="n">plt</span><span class="o">.</span><span class="n">xlabel</span><span class="p">(</span><span class="s1">&#39;X [pixel]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
+<span class="n">plt</span><span class="o">.</span><span class="n">ylabel</span><span class="p">(</span><span class="s1">&#39;Y [pixel]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
+
+<span class="n">cbar</span> <span class="o">=</span> <span class="n">plt</span><span class="o">.</span><span class="n">colorbar</span><span class="p">(</span><span class="n">ret</span><span class="p">,</span> <span class="n">orientation</span><span class="o">=</span><span class="s1">&#39;vertical&#39;</span><span class="p">,</span> <span class="n">shrink</span><span class="o">=</span><span class="mf">0.9</span><span class="p">)</span>
+<span class="n">cbar</span><span class="o">.</span><span class="n">set_label</span><span class="p">(</span><span class="sa">r</span><span class="s1">&#39;$\log_</span><span class="si">{10}</span><span class="s1">$ SFR [M$_{\odot}$ yr$^{-1}$]&#39;</span><span class="p">,</span> <span class="n">size</span><span class="o">=</span><span class="mi">13</span><span class="p">)</span>
 <span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
 </pre></div>
 </div>
diff --git a/docs/genindex.html b/docs/genindex.html
index 146069a..e86901c 100644
--- a/docs/genindex.html
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@@ -127,7 +127,7 @@
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 <li class="toctree-l1"><a class="reference internal" href="examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
+<p class="caption" role="heading"><span class="caption-text">―――――――――――――――</span></p>
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diff --git a/docs/index.html b/docs/index.html
index 0b50d7b..26fb6d3 100644
--- a/docs/index.html
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 </ul>
-<p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
+<p class="caption" role="heading"><span class="caption-text">―――――――――――――――</span></p>
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 <li class="toctree-l1"><a class="reference internal" href="API/index.html">API</a><ul>
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diff --git a/docs/py-modindex.html b/docs/py-modindex.html
index 34c925d..7ff9aaf 100644
--- a/docs/py-modindex.html
+++ b/docs/py-modindex.html
@@ -128,7 +128,7 @@
 <li class="toctree-l1"><a class="reference internal" href="examples/example1.html">1. Resolved stellar mass map with LePhare</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
+<p class="caption" role="heading"><span class="caption-text">―――――――――――――――</span></p>
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 <li class="toctree-l1"><a class="reference internal" href="API/index.html">API</a><ul>
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diff --git a/docs/search.html b/docs/search.html
index 7c2d61a..642374c 100644
--- a/docs/search.html
+++ b/docs/search.html
@@ -127,7 +127,7 @@
 <li class="toctree-l1"><a class="reference internal" href="examples/example1.html">1. Resolved stellar mass map with LePhare</a></li>
 <li class="toctree-l1"><a class="reference internal" href="examples/example2.html">2. Resolved SFR map from an already existing LePhare output file</a></li>
 </ul>
-<p class="caption" role="heading"><span class="caption-text">----------------------------------------</span></p>
+<p class="caption" role="heading"><span class="caption-text">―――――――――――――――</span></p>
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