From dc6d224c433f3af298fb58c2ea4b7e25b5df6477 Mon Sep 17 00:00:00 2001 From: Yunfei Guo Date: Mon, 17 Oct 2016 20:47:46 -0700 Subject: [PATCH 1/2] modify image location --- README.md | 2 +- img/seqmule.png | 1 + 2 files changed, 2 insertions(+), 1 deletion(-) create mode 120000 img/seqmule.png diff --git a/README.md b/README.md index a9469e8..46b4aa1 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -![SeqMule](doc/img/seqmule.png) +![SeqMule](img/seqmule.png) # SeqMule: Automated human exome/genome variants detection SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file. SeqMule also has some built-in functions, such as pooling consensus calls from various callers, plotting a Venn diagram showing intersection among different callers, and downloading databases. SeqMule can be used for both Mendelian disease study and cancer genome study. diff --git a/img/seqmule.png b/img/seqmule.png new file mode 120000 index 0000000..f3baa0a --- /dev/null +++ b/img/seqmule.png @@ -0,0 +1 @@ +doc/img/seqmule.png \ No newline at end of file From 702021b2f39bce589939254c477011a60b73a6ce Mon Sep 17 00:00:00 2001 From: Yunfei Guo Date: Mon, 17 Oct 2016 20:53:26 -0700 Subject: [PATCH 2/2] replace softlink with actual image --- img/seqmule.png | Bin 19 -> 3818 bytes 1 file changed, 0 insertions(+), 0 deletions(-) mode change 120000 => 100644 img/seqmule.png diff --git a/img/seqmule.png b/img/seqmule.png deleted file mode 120000 index f3baa0a..0000000 --- a/img/seqmule.png +++ /dev/null @@ -1 +0,0 @@ -doc/img/seqmule.png \ No newline at end of file diff --git a/img/seqmule.png b/img/seqmule.png new file mode 100644 index 0000000000000000000000000000000000000000..15315204ed6546f1b04b921f5f257f1c81b89bcd GIT binary patch literal 3818 zcmVJI2`v3oa|NH*;-uGU2!>HX*9v5rlyRq;u zZT0i~%))UZkXg~7+_@Wbf!!o*q-kUY)QQfH{Ixr3s(Y~~mqVL)=bTyB^1j=DNm4397%-8LxPPKW1k zGFWVa!;4`sK0tEOz&P0P$-;s%&rzzoRNZrUdkllJq$5TmjXm)mY7xcs4C zop!eaz}Pu508=W+FU3!8QWnAG5ga~#8XGRf0Eil-gvu)YwKGnOaWoSNC9;ZzeJA#~ z>{ge>#0D_MGllunaBz~cm|OwD126(VU}FG8OB|d@OV$eVrgd(A8_^;lS zb0$fq-WSvC7`CDCBgmi1Aec~e^3wINjHt{ALzsLqhI5lMVs!3z=?TH1<@V0w|22`ouV*3qOchEUMvG#l*$Y8*JZ zrI_TKS4ztt5EWLKTCas2k8bhzF1bBRb=k}=o0W9M9$JWOfnxJxcngPq!0oV6=S-1| zU~~P|ZPd}_E0#DOGDI?M;)2z(nWUC9XAcaV-9I+TEZAM@ir+Q9{ZwcbKwNYqc!Jxp z8I3y8q#43V6@u&{!owKNZP#^|kL!Or17(fXT{3_3Dla3SI#=!a$gH^O*CA=?TFI1o z)Oq*+KD2Z;MMkXhB~#|&#G+`tB}?)*5ojc@)ZBh!#Im&8jSlE`du%9i@sml5)^L(C zXihJgG6xo~Ie$pGdoz0MpgeumbNsAAAT)61yPktv@e@uDe@R)k zA%4cMEr#vRLJ?(Q9{Ehbr;X>5GAi?^r?hBpM-VDr&Qm zGx$t0G;KIYLW>&2l59Plexy!VST311Pj~spAjaf&;}SXqILcu?`+xjef8&B(qeg#_ zdk}Oo+D)7uEl7zApI}MkH~~C8-*0nTj6ln9<3iTD*APlmS8mi@JvA7j4J>g2Kfe@Q z#-ZyoHrJ7P#bCIF(g`M8IO$$owI~{_st&e1m0+=YI;y zkA7iny39#ThaA`h1YcyhelFw5SE9v)K$UW-(j+s#Xzkh1()e)dGnU>{KR9or?yn+h<{!S9*9rMnfK zr4@@Td$$Za9U{Jx1j*P~D=aAU#WHR6^JI+lnIySt13$9>C(Z9|431D}QAYyFaQ&=& z!D_!Ag51f{@`c)(Bff48W-ck2jZ1;XYgM+2i)T@Gsrv3yc#o|0uM2XDkU!aa6rDT% zZm7S|x$UiqZ|sZ;Bx6GjwdUld>zr1Tsr71{%f)aw6x-kSST8|saOu=}>5sp}P0pgW z3nwu{aL*K8W`4^DFE~y5I0pRl%aYRh)STRuY(Z`b)&<#^LaE;!wHJ@@s-BijU!>gq z0kyjY6DG5ziJskj#up^e7DO_V4f;%iT}a2apy51>s3U>oFzGaB_s7p(?$-msK!4>& z-;qp#IDPdCfw#tRyT0EGd1Ebn3tU0UvS$d6m&n@s)uyJ)qo}L)9^Ni4spKYSOQ$bl zN#ZSC&4!zo%&jE5gLM)l7w5+@nQ5#3KrY+u?%K7|@#I;4p~wr;`9mpHPlJ^Sb4$#fjhItbv5>T|&PKmTLq93?og{F= zVJ)1fBZ7oI)&1=jL`y%n$W5J)Fz*pdM}x2Pq5Y33!#gw z3Z~za{^;|tC#S^}ElB3BCdGgM5?@(`kR~jwz#+T$LHGyV)svbt`=NBQVv?SZ%}DMK z80+?TVAddhSUHvUVdb*He6IJ0FVqLOG8ha~>Kctf-+tf-XRxAdsYVf$!hh(j*)q?y9S;#z5cv9Ojt$kaCC(LT_1j0)$O+GF9*)-BSFfW3fG7D2M?Cqr|jJEH!vKjRPv>XkgF#T#z}nq929F-XiW)kZ1&QqX zY7{NfTUT?`46>_Mz?)lDZRiYLizdzhtBHJ7>A(6T+_$wy z0d|M@Z)&+}XthoGpwj#K!T#7Qv`sFCtenp%nqwQ zcp>G^_c6pTl37*lPLqx)kjU?Uj4}em`TkSig6M;8BH$-3d^~cH(pEl4ZXlChS9=WP zn^X*&OP5%v@~*k#v<6)jP5!Q5F5(>Myf% zUq}37@Cf|BcH!A#LfDS?N;u7 z->&HiOu_n&??SQ(PcpN{hUKT075J+yB`e2*m#*-oZ?<)QUpo*-$`vIj!n z7n=#u0tk_5z|9(mK@+HbY)240V8cnuK-h<82A}3-Kn#IFDbQJ12p{G6hwKvM4BoVn&t+_YTKV(e?Dt`D1z zA|RLzk&j9byTADu4uA}YzkZeE`f+iblpJsbTfegZ#2($HYO?y5m?54rmnBOENB};d zvdp2qm?swY8*kQ9p1-epCxy@uPE;SGR)6ILLL*z2l>PLZ_Wo{OW}!pZi!J5rpL|ck ziW+Hw6|NxcyOInhqzqoWOPIeJF#}|*?UPsI=PYM(1lFDo5KXd(Sv-@KyffU1vIS3rfSz+Ie}@(oRnbp9^S?hN+r|oL)sw7n}$A689F$$Uf$8UVx!-a#Q#fRs!;E@9m@BBdOJ@PqKIIyZZydJOaBv}Bpnw(Z6r4U`+2}Tz>d?#e`S)qr76*VG|1QWu9cR~KNuyk{rH@n9Z*auYOS;$cOg?9>9-k1SO z12%d0g4FrNyCg%?Ywk*r5CFs_mErskk+|To?r%OC7hegEs`a1VNBOkz{C&rW$^~VD zp@bcetc7tmf4&0Vh+~|8fiogVvWi6vX889PxT!hfqM32Ac1J*Bu(_a>q4QZ>MIV0l zq^Pp1SR1pLq~8CjrK?Fke-$ubl9}MJ?<`z)i_2y;x8LYHwhI{<;q&PPQUoN=;QIuZ zAMMu}u@)Uj&@%F5?Zv}vX_By@ls&vOYw5UY>1?!Xdk~O_;UBlC4}7NoiF^w{m`8p! z=KW-h!;1m-vrurdlF#P4Y!=;>6Yk+JCQ!Aq!1p&i=<+RH&E}4Vp6|E0opurVU0b%eeIN-YOeWZOl7R6t3S)ST43gW8BW=}lcU~NiBr#NifMixQj2|{k g3KMI?+y4a^0CO7{`=`i3lK=n!07*qoM6N<$f@6AKMgRZ+ literal 0 HcmV?d00001