From d255bbd7bd34f148eb6b62631b821e1352fce9cc Mon Sep 17 00:00:00 2001
From: Adriano Rutz <adriano.rutz@hotmail.com>
Date: Mon, 19 Aug 2024 14:50:57 +0200
Subject: [PATCH] Adding more info to the `chemical` pages

---
 scholia/app/templates/chemical.html                    | 10 ++++++++++
 .../app/templates/chemical_biological-processes.sparql | 10 ++++++++++
 .../app/templates/chemical_found-in-matrix-np.sparql   | 10 ++++++++++
 3 files changed, 30 insertions(+)
 create mode 100644 scholia/app/templates/chemical_biological-processes.sparql
 create mode 100644 scholia/app/templates/chemical_found-in-matrix-np.sparql

diff --git a/scholia/app/templates/chemical.html b/scholia/app/templates/chemical.html
index 30a3af939..4eee02c57 100644
--- a/scholia/app/templates/chemical.html
+++ b/scholia/app/templates/chemical.html
@@ -10,6 +10,8 @@
 {{ sparql_to_table('related') }}
 {{ sparql_to_table('recent-literature') }}
 {{ sparql_to_iframe('publications-per-year') }}
+{{ sparql_to_table('biological-processes') }}
+{{ sparql_to_table('found-in-matrix-np') }}
 {{ sparql_to_table('found-in-taxon') }}
 
 {% endblock %}
@@ -66,6 +68,14 @@ <h2 id="publications-per-year">Publications per year</h2>
   <iframe class="embed-responsive-item" id="publications-per-year-iframe" ></iframe>
 </div>
 
+<h2 id="biological-processes">Biological processes in which the chemical is involved</h2>
+
+<table class="table table-hover" id="biological-processes-table"></table>
+
+<h2 id="found-in-matrix-np">Matrices that are natural products of taxa in which the chemical was found</h2>
+
+<table class="table table-hover" id="found-in-matrix-np-table"></table>
+
 <h2 id="found-in-taxon">Taxa in which the chemical was found</h2>
 
 <table class="table table-hover" id="found-in-taxon-table"></table>
diff --git a/scholia/app/templates/chemical_biological-processes.sparql b/scholia/app/templates/chemical_biological-processes.sparql
new file mode 100644
index 000000000..bfb354cba
--- /dev/null
+++ b/scholia/app/templates/chemical_biological-processes.sparql
@@ -0,0 +1,10 @@
+PREFIX target: <http://www.wikidata.org/entity/{{ q }}>
+
+SELECT DISTINCT ?pathway ?pathwayLabel (CONCAT("/pathway/", SUBSTR(STR(?pathway), 32)) AS ?pathwayUrl) WHERE {
+  VALUES ?chemical { target: }
+  ?chemical wdt:P361 ?pathway.
+  ?pathway wdt:P527 ?chemical.
+  ?pathway wdt:P31 wd:Q2996394.
+  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
+} ORDER BY ASC(?pathwayLabel)
+  LIMIT 250
diff --git a/scholia/app/templates/chemical_found-in-matrix-np.sparql b/scholia/app/templates/chemical_found-in-matrix-np.sparql
new file mode 100644
index 000000000..9fc669bc8
--- /dev/null
+++ b/scholia/app/templates/chemical_found-in-matrix-np.sparql
@@ -0,0 +1,10 @@
+PREFIX target: <http://www.wikidata.org/entity/{{ q }}>
+
+SELECT DISTINCT ?matrix ?matrixLabel ?taxon ?taxonLabel (CONCAT("/taxon/", SUBSTR(STR(?taxon), 32)) AS ?taxonUrl) WHERE {
+  VALUES ?chemical { target: }
+  ?chemical wdt:P361 ?matrix.
+  ?matrix (wdt:P279*/wdt:P1582) ?taxon .
+  ?matrix wdt:P527 ?chemical.
+  SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
+} ORDER BY ASC(?taxonLabel)
+  LIMIT 250