From c70c32a54cfef31bffe0cef466eb14d18db2d127 Mon Sep 17 00:00:00 2001
From: Baxter Rogers <baxter.rogers@vanderbilt.edu>
Date: Fri, 12 Apr 2024 16:57:07 -0500
Subject: [PATCH] float

---
 src/create_json.py          | 2 +-
 src/fmriprep-prep-nojson.sh | 4 ++++
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/src/create_json.py b/src/create_json.py
index 8cf48a8..f3678b5 100755
--- a/src/create_json.py
+++ b/src/create_json.py
@@ -21,7 +21,7 @@
 tr = nii.header['pixdim'][4]
 
 # fmriprep minimum needed fields
-json_data['RepetitionTime'] = f'{tr}'
+json_data['RepetitionTime'] = float(tr)
 
 ## Slice timing
 # Assumes slices are evenly spaced in the TR (i.e. not a sparse
diff --git a/src/fmriprep-prep-nojson.sh b/src/fmriprep-prep-nojson.sh
index 16d1179..2700986 100755
--- a/src/fmriprep-prep-nojson.sh
+++ b/src/fmriprep-prep-nojson.sh
@@ -56,6 +56,10 @@ if [ "${slicetiming}" = "ABIDE" ]; then
     export slicetiming=$(slicetiming_ABIDE.py --subject_label "${sub}")
 fi
 
+# If subject, session have _, drop it because it's not compatible with BIDS
+# file naming
+sub=${sub//_/}
+ses=${ses//_/}
 
 # Rename and relocate files according to bids scheme