- Connect to internet
- https://github.com/USDA-VS/nvsl_bioinformatic_training
- Install Miniconda
- Discuss command-line basics
- Why is command-line used
- Useful resources
- Unix commands
- Common pitfalls
- Anaconda
- Troubleshooting
- General command-line topics
- Discuss compute resources
- Edit text
- Package managers
- Discuss FASTA and FASTQs
- vSNP
- Kraken
- AMRFinder-Plus
- Python
- NCBI
- Miscellaneous topics