get_metadata cannot import dvl_metadata_capture and will always raise an exception

[peterk87]

Hello,

In the get_metadata function, the dvl_metadata_capture cannot be resolved.

GenoFLU/bin/genoflu.py

Lines 168 to 170 in 962c834

	def get_metadata(self,):
	import dvl_metadata_capture
	sample_name = self.sample_name

As such, the get_metadata function will always raise an exception.

GenoFLU/bin/genoflu.py

Lines 374 to 377 in 962c834

	try:
	genoflu.get_metadata()
	except:
	pass

[stuber]

Hi, How’s the script being called? Can show how it is being called and the error you’re seeing. Thanks, From: Peter Kruczkiewicz ***@***.***> Date: Thursday, January 16, 2025 at 9:22 AM To: USDA-VS/GenoFLU ***@***.***> Cc: Subscribed ***@***.***> Subject: [USDA-VS/GenoFLU] get_metadata cannot import dvl_metadata_capture and will always raise an exception (Issue #11) Hello, In the get_metadata function, the dvl_metadata_capture cannot be resolved. https://github.com/USDA-VS/GenoFLU/blob/962c834e22980ff9c000890d9ef2f37ea2327b6f/bin/genoflu.py#L168-L170 As such, the get_metadata function will always raise an exception. https://github.com/USDA-VS/GenoFLU/blob/962c834e22980ff9c000890d9ef2f37ea2327b6f/bin/genoflu.py#L374-L377 — Reply to this email directly, view it on GitHub<#11>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/ABMMFMKHNWO3DXQDJLUR7TT2K7MDPAVCNFSM6AAAAABVKACBQOVHI2DSMVQWIX3LMV43ASLTON2WKOZSG44TGMRRGA4TSMY>. You are receiving this because you are subscribed to this thread.Message ID: ***@***.***> This electronic message contains information generated by the USDA solely for the intended recipients. Any unauthorized interception of this message or the use or disclosure of the information it contains may violate the law and subject the violator to civil or criminal penalties. If you believe you have received this message in error, please notify the sender and delete the email immediately.

[peterk87]

There's no error since exception handling is suppressed with try: <code>; except: pass in the block of code after if __name__ == "__main__":.

PyCharm shows that there is no module named dvl_metadata_capture

genoflu.py script would be called directly.

After modifying the script to log the exception, it outputs No module named 'dvl_metadata_capture'