diff --git a/docker-images/Dockerfile b/docker-images/Dockerfile index edebbeb..6de2dda 100644 --- a/docker-images/Dockerfile +++ b/docker-images/Dockerfile @@ -15,7 +15,7 @@ RUN mamba install -c bioconda vsearch=2.22.1 hmmer=3.1b2 # Copy the itsxpress package files and install dependencies COPY .. /app WORKDIR /app -RUN pip install --no-cache-dir . +RUN git clone https://github.com/USDA-ARS-GBRU/itsxpress.git && cd itsxpress && pip install . # Set the default command to run itsxpress CMD ["itsxpress"]