DESCRIPTION

Package: HiLDA
Type: Package
Title: Conducting statistical inference on comparing the mutational exposures of 
    mutational signatures by using hierarchical latent Dirichlet allocation 
Depends: R(>= 4.1), ggplot2
Imports: R2jags, abind, cowplot, grid, forcats, stringr,
         GenomicRanges, S4Vectors, XVector, Biostrings, GenomicFeatures,
         BSgenome.Hsapiens.UCSC.hg19, BiocGenerics, tidyr, grDevices, stats,
         TxDb.Hsapiens.UCSC.hg19.knownGene, utils, methods, Rcpp
Suggests: knitr, rmarkdown, testthat, BiocStyle
Version: 1.7.6
Date: 2021-10-13
Authors@R: c(person("Zhi", "Yang", email = "zyang895@gmail.com", 
             role = c("aut", "cre")),
             person("Yuichi", "Shiraishi", email = "friend1ws@gmail.com", 
             role = "ctb"))
Description: A package built under the Bayesian framework of applying 
    hierarchical latent Dirichlet allocation. It statistically tests whether the 
    mutational exposures of mutational signatures (Shiraishi-model signatures) 
    are different between two groups. The package also provides inference and visualization. 
License: GPL-3
URL: https://github.com/USCbiostats/HiLDA,
     https://doi.org/10.1101/577452
BugReports: https://github.com/USCbiostats/HiLDA/issues
SystemRequirements: JAGS 4.0.0
biocViews: Software, SomaticMutation, Sequencing, StatisticalMethod, Bayesian
RoxygenNote: 7.1.2
LinkingTo: Rcpp
VignetteBuilder: knitr
Encoding: UTF-8