test_suite.yaml

name: Tests

# Test on all pushes, except when the push is literally just a tag (because we
# tag automatically via CI, and therefore there's no extra code in that push).
# Also, only test on pull requests into master.
on:
  push:
    tags-ignore:
      - 'v*'
  pull_request:
    branches:
      - 'master'

jobs:
  tests:
    env:
      ENV_NAME: tests
      PYTHON: ${{ matrix.python-version }}
      OS: ${{ matrix.os }}
    name: Testing
    #    needs: [linter]
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ubuntu-latest, macos-latest]
        python-version: [3.6, 3.7, 3.8]
    steps:
      - uses: actions/checkout@master
        with:
          fetch-depth: 1

      - name: Get Miniconda MacOSX
        if: matrix.os == 'macos-latest'
        run: |
          wget https://repo.continuum.io/miniconda/Miniconda3-latest-MacOSX-x86_64.sh -O $HOME/miniconda.sh;
          bash $HOME/miniconda.sh -b -p $HOME/miniconda
      - name: Get Miniconda Linux
        if: matrix.os == 'ubuntu-latest'
        run: |
          wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O $HOME/miniconda.sh;
          bash $HOME/miniconda.sh -b -p $HOME/miniconda
      - name: Setup Environment
        run: |
          export PATH="$HOME/miniconda/bin:$PATH"
          ./ci/install_conda.sh
      - name: Install
        run: |
          export PATH="$HOME/miniconda/bin:$PATH"
          source activate ${ENV_NAME}
          conda install pytest pytest-runner coverage flake8 numpy "numba<0.49.0" cffi astropy h5py scipy pip
          conda install -c conda-forge healpy pyuvdata fftw
          CPATH=$(dirname $(which python))/../include:$CPATH LIBRARY_PATH=$(dirname $(which python))/../lib:$LIBRARY_PATH pip install git+https://github.com/UPennEoR/ssht_numba.git
          pip install git+https://github.com/UPennEoR/spin1_beam_model.git
          echo "which gfortran"
          which gfortran
          pip install .[testing]
      - name: Run Tests
        run: |
          export PATH="$HOME/miniconda/bin:$PATH"
          source activate $ENV_NAME
          python -m pytest --cov=RIMEz --cov-config=.coveragerc --cov-report xml:./coverage.xml --durations=25
      - uses: codecov/codecov-action@master
        if: matrix.os == 'ubuntu-latest' && success()
        with:
          token: ${{secrets.CODECOV_TOKEN}} #required
          file: ./coverage.xml #optional