From 9d8584fe8ddc8dc01aa5ffe6655e07ef5db1507e Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 6 Aug 2024 10:34:56 -0600 Subject: [PATCH 1/3] Update freyja to 1.5.1-07_02_2024-01-27-2024-08-01 --- modules/freyja.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index a48b3f2..986aca1 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja_variants { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-07-26' + container 'staphb/freyja:1.5.1-07_02_2024-01-27-2024-08-01' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' From 2839b3fb96dd0b627d18414b92edfe7b89cd5179 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 6 Aug 2024 10:35:49 -0600 Subject: [PATCH 2/3] Update pangolin to 4.3.1-pdata-1.29 --- modules/pangolin.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/pangolin.nf b/modules/pangolin.nf index 2386e8b..8f1e6c2 100644 --- a/modules/pangolin.nf +++ b/modules/pangolin.nf @@ -2,7 +2,7 @@ process pangolin { tag "SARS-CoV-2 lineage Determination" label "process_medium" publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/pangolin:4.3.1-pdata-1.28.1' + container 'staphb/pangolin:4.3.1-pdata-1.29' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} From 26ae41da316049d21f2933401bfa83cb3a8a6959 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 6 Aug 2024 10:37:06 -0600 Subject: [PATCH 3/3] Update nextflow.config to 3.15.24219 --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index bf7bf7c..d048b7a 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.15.24212' + version = 'v3.15.24219' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation'