From 5bff128e721b8cf89fa0e767bf5f7e4cf8d9d4bc Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 18 Jun 2024 09:54:27 -0600 Subject: [PATCH 1/2] Update freyja to 1.5.0-06_11_2024-01-17-2024-06-11 --- modules/freyja.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index 0f06013..fc60489 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja_variants { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-06_11_2024-01-17-2024-06-11' + container 'staphb/freyja:1.5.0-06_17_2024-01-38-2024-06-18' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -53,7 +53,7 @@ process freyja_demix { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-06_11_2024-01-17-2024-06-11' + container 'staphb/freyja:1.5.0-06_17_2024-01-38-2024-06-18' //#UPHLICA maxForks 10 @@ -105,7 +105,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-06_11_2024-01-17-2024-06-11' + container 'staphb/freyja:1.5.0-06_17_2024-01-38-2024-06-18' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} From 07b93cb211f022e6401a2f5f36933985fb7f760f Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 18 Jun 2024 09:55:02 -0600 Subject: [PATCH 2/2] Update nextflow.config to 3.14.240618 --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index bbde9ac..4545d60 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.14.240610' + version = 'v3.14.240618' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation'