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Update 2024 05 07 #326

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merged 2 commits into from
May 7, 2024
Merged

Update 2024 05 07 #326

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2bde938
Update to 3.13.20240507
erinyoung May 7, 2024
c66c0b7
Update pangolin to 4.3.1-pdata-1.27
erinyoung May 7, 2024
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2 changes: 1 addition & 1 deletion modules/pangolin.nf
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Expand Up @@ -2,7 +2,7 @@ process pangolin {
tag "SARS-CoV-2 lineage Determination"
label "process_medium"
publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
container 'staphb/pangolin:4.3.1-pdata-1.26'
container 'staphb/pangolin:4.3.1-pdata-1.27'

//#UPHLICA maxForks 10
//#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
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2 changes: 1 addition & 1 deletion nextflow.config
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Expand Up @@ -5,7 +5,7 @@ manifest {
name = 'Cecret'
author = 'Erin Young'
homePage = 'https://github.com/UPHL-BioNGS/Cecret'
version = 'v3.13.20240430'
version = 'v3.13.20240507'
defaultBranch = 'master'
recurseSubmodules = false
description = 'Reference-based consensus creation'
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