From 2bde9389e42fef566742014aba5f9587089c1bec Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 7 May 2024 10:01:30 -0600 Subject: [PATCH 1/2] Update to 3.13.20240507 --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index d2eaede..50d5ab2 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.13.20240430' + version = 'v3.13.20240507' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation' From c66c0b76150271d95b65cce07d2ed63a1f90ae39 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 7 May 2024 10:02:32 -0600 Subject: [PATCH 2/2] Update pangolin to 4.3.1-pdata-1.27 --- modules/pangolin.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/pangolin.nf b/modules/pangolin.nf index 276064a..dbc0adb 100644 --- a/modules/pangolin.nf +++ b/modules/pangolin.nf @@ -2,7 +2,7 @@ process pangolin { tag "SARS-CoV-2 lineage Determination" label "process_medium" publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/pangolin:4.3.1-pdata-1.26' + container 'staphb/pangolin:4.3.1-pdata-1.27' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}