From 5412e35ac290e4241891105d890c313b427e09b6 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 3 Oct 2023 09:41:43 -0600 Subject: [PATCH 1/2] Update freyja to 1.4.7-2023-10-03 --- modules/freyja.nf | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index 1f16573..e10c6ad 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja { label "process_medium" errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-09-26' + container 'quay.io/uphl/freyja:1.4.7-2023-10-03' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -57,7 +57,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-09-26' + container 'quay.io/uphl/freyja:1.4.7-2023-10-03' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} From c5f7313d8dfef84ca91c7cf8361476242b756222 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 3 Oct 2023 09:42:17 -0600 Subject: [PATCH 2/2] Update nextflow.config to new version --- nextflow.config | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/nextflow.config b/nextflow.config index a4f9262..9584dec 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.8.20230926' + version = 'v3.8.20231003' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation' @@ -83,4 +83,4 @@ process { withLabel:process_high { cpus = params.maxcpus } -} \ No newline at end of file +}