From eb2b39788280155a2ba9dec2e1d32913813d6b38 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 14 May 2024 11:17:49 -0600 Subject: [PATCH 1/2] Update nextflow.config to 3.13.20240514 --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index 50d5ab2..135daaa 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.13.20240507' + version = 'v3.13.20240514' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation' From a3ace7126723feba7154355be70166ab79361577 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 14 May 2024 11:18:44 -0600 Subject: [PATCH 2/2] Update freyja to 1.5.0-05_11_2024-01-10-2024-05-14 --- modules/freyja.nf | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index c8df73f..9c29998 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja_variants { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30' + container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -53,7 +53,7 @@ process freyja_demix { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30' + container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14' //#UPHLICA maxForks 10 @@ -105,7 +105,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir path: params.outdir, mode: 'copy', saveAs: { filename -> filename.equals('versions.yml') ? null : filename } - container 'staphb/freyja:1.5.0-04_30_2024-01-10-2024-04-30' + container 'staphb/freyja:1.5.0-05_11_2024-01-10-2024-05-14' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}