From bba888ff15950b0ff1319a007a21255ed89f96a5 Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 9 Jan 2024 15:05:47 -0700 Subject: [PATCH 1/3] Update freyja to 1.4.8-2024-01-09 --- modules/freyja.nf | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/modules/freyja.nf b/modules/freyja.nf index ea8ddb9..1346cd5 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja_variants { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.8-2024-01-02' + container 'quay.io/uphl/freyja:1.4.8-2024-01-09' //#UPHLICA maxForks 10 @@ -45,7 +45,7 @@ process freyja_demix { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.8-2024-01-02' + container 'quay.io/uphl/freyja:1.4.8-2024-01-09' //#UPHLICA maxForks 10 @@ -87,7 +87,7 @@ process freyja_boot { label "process_medium" //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.8-2024-01-02' + container 'quay.io/uphl/freyja:1.4.8-2024-01-09' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -126,7 +126,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.8-2024-01-02' + container 'quay.io/uphl/freyja:1.4.8-2024-01-09' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} From ce63c149c670aec6ec93be07737ee3b5918493ee Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 9 Jan 2024 15:19:26 -0700 Subject: [PATCH 2/3] Update heatcluster to 1.0.2c --- modules/heatcluster.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/modules/heatcluster.nf b/modules/heatcluster.nf index 109bf79..61ab2b3 100755 --- a/modules/heatcluster.nf +++ b/modules/heatcluster.nf @@ -1,7 +1,7 @@ process heatcluster { tag "HeatCluster" publishDir params.outdir, mode: 'copy' - container 'quay.io/uphl/heatcluster:1.0.2b-2023-12-26' + container 'quay.io/uphl/heatcluster:1.0.2c-2024-01-09' maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-medium' From 28a011b1c350eb120ae869d33c3606c2f99497fb Mon Sep 17 00:00:00 2001 From: Young Date: Tue, 9 Jan 2024 15:19:56 -0700 Subject: [PATCH 3/3] Update to 3.10.20240109 --- nextflow.config | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nextflow.config b/nextflow.config index 93fec78..8b6f1ba 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.10.20240103' + version = 'v3.10.20240109' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation'