diff --git a/modules/artic.nf b/modules/artic.nf index 1734eb8..aaf77f8 100644 --- a/modules/artic.nf +++ b/modules/artic.nf @@ -2,7 +2,7 @@ process artic { tag "${sample}" label "process_high" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/artic:1.2.4-1.9.4-1' + container 'quay.io/uphl/artic:1.2.4-1.11.1' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} @@ -61,7 +61,7 @@ process artic { process artic_read_filtering { tag "${sample}" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/artic:1.2.4-1.9.4-1' + container 'quay.io/uphl/artic:1.2.4-1.11.1' label "process_single" //#UPHLICA maxForks 10 diff --git a/modules/freyja.nf b/modules/freyja.nf index bc8d6ec..cb48861 100644 --- a/modules/freyja.nf +++ b/modules/freyja.nf @@ -3,7 +3,7 @@ process freyja { label "process_medium" errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-10-17' + container 'quay.io/uphl/freyja:1.4.7-2023-10-24' //#UPHLICA maxForks 10 //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge' @@ -57,7 +57,7 @@ process freyja_aggregate { tag "Aggregating results from freyja" label "process_single" publishDir "${params.outdir}", mode: 'copy' - container 'quay.io/uphl/freyja:1.4.7-2023-10-17' + container 'quay.io/uphl/freyja:1.4.7-2023-10-24' //#UPHLICA maxForks 10 //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'} diff --git a/nextflow.config b/nextflow.config index 9324094..7a272c9 100644 --- a/nextflow.config +++ b/nextflow.config @@ -5,7 +5,7 @@ manifest { name = 'Cecret' author = 'Erin Young' homePage = 'https://github.com/UPHL-BioNGS/Cecret' - version = 'v3.8.20231017' + version = 'v3.8.20231024' defaultBranch = 'master' recurseSubmodules = false description = 'Reference-based consensus creation'