From 40d104ff25873acc9ef534b42b5e7b4f9567de28 Mon Sep 17 00:00:00 2001 From: Young Date: Wed, 11 Sep 2024 12:43:13 -0600 Subject: [PATCH] Reduce size filter to 50 --- subworkflows/cecret.nf | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/subworkflows/cecret.nf b/subworkflows/cecret.nf index ef4e51a..51564a1 100644 --- a/subworkflows/cecret.nf +++ b/subworkflows/cecret.nf @@ -87,7 +87,7 @@ workflow cecret { } if ( params.trimmer == 'ivar' ) { - ivar_trim(ch_bam.filter{ it -> it[1].size() > 500 }.map{it -> tuple( it[0], it[1])}.combine(ch_primer_bed)) + ivar_trim(ch_bam.filter{ it -> it[1].size() > 50 }.map{it -> tuple( it[0], it[1])}.combine(ch_primer_bed)) ch_trim_bam = ivar_trim.out.bam_bai ch_for_version = ch_for_version.mix(ivar_trim.out.trimmer_version)