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[FEATURE] | Dynamically analyse any number of population clusters or groupings #7

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G-kodes opened this issue Feb 17, 2021 · 1 comment
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enhancement New feature or request

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G-kodes commented Feb 17, 2021

Describe the solution you'd like
TO iteratively handle as many population grouping levels as desired by iteratively analyzing samples dynamically.

Describe alternatives you've considered, if any
use an if statement to iteratively fire a rule to analyze each cluster on its own. Will require that we transcribe the clusters into the appropriate format for PLINK-2.0 as well though.

@G-kodes G-kodes added the enhancement New feature or request label Feb 17, 2021
@G-kodes G-kodes self-assigned this Feb 17, 2021
G-kodes added a commit that referenced this issue Feb 17, 2021
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G-kodes commented Oct 29, 2021

Snakemake has recently released support for an official portable encapsulated project (PEP), a metadata storage standard specifically designed to standardise the representation of sample metadata and decouple it from the analysis. This is a very good practice to implement and support ourselves and until this, we have essentially been doing our own version of this in the form of our cluster storage information.

I would recommend implementing this standard to help facilitate Dynamic cluster count analysis.

G-kodes added a commit that referenced this issue Oct 29, 2021
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