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coMethDMR_data

This repository contains utility data sets for additional examples in the vignettes of https://github.com/TransBioInfoLab/coMethDMR.

  • scripts/ contains the R scripts necessary to create these data sets
  • data/ contains the compressed data sets (in .RDS form)
    • We recently recalculated the EPIC regions using the 10b4 dataset. Please use EPIC_10b4_Gene_3_200.rds.

Necessary Packages and Data Sets

You will need the following packages:

  • the Tidyverse
  • our package coMethDMR
  • Illumina EPIC annotation IlluminaHumanMethylationEPICanno.ilm10b2.hg19
  • the parallel package
  • IMA's 450k region-level annotation library (specifically the ISLANDSInd data set) from https://rforge.net/IMA/#sec-4