diff --git a/CHANGELOG.md b/CHANGELOG.md index 22857aa5..08b21f16 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,10 @@ # Changelog +### Changed + +- Drop support for HDF cache, and use a Pickle cache instead. CacheEnum.HDF is now an alias to CacheEnum.pickle + and will be dropped in v0.15.0 + ## [0.13.0] - 2024-07-17 ### Changed diff --git a/README.md b/README.md index 00fc0722..150811e1 100644 --- a/README.md +++ b/README.md @@ -88,25 +88,3 @@ If you just want to download a file, without converting it to a pandas dataframe ... Image size: 60284 bytes ``` - -## Installation on macOS M1 chipset - -## install everything -```console -brew install hdf5 snappy -HDF5_DIR="/opt/homebrew/Cellar/hdf5/1.12.1/" CPPFLAGS="-I/opt/homebrew/Cellar/snappy/1.1.9/include -L/opt/homebrew/Cellar/snappy/1.1.9/lib" poetry install -``` - -For more details, here is what is needed: - -### install pytables -```console -brew install hdf5 -HDF5_DIR="/opt/homebrew/Cellar/hdf5/1.12.1/" poetry run pip install tables -``` - -### install python-snappy -```console -brew install snappy -CPPFLAGS="-I/opt/homebrew/Cellar/snappy/1.1.9/include -L/opt/homebrew/Cellar/snappy/1.1.9/lib" poetry run pip install python-snappy -``` diff --git a/docs/index.md b/docs/index.md index 0157b89b..b97dcd71 100644 --- a/docs/index.md +++ b/docs/index.md @@ -86,25 +86,3 @@ If you just want to download a file, without converting it to a pandas dataframe ... Image size: 60284 bytes ``` - -## Installation on macOS M1 chipset - -## install everything -```console -brew install hdf5 snappy -HDF5_DIR="/opt/homebrew/Cellar/hdf5/1.12.1/" CPPFLAGS="-I/opt/homebrew/Cellar/snappy/1.1.9/include -L/opt/homebrew/Cellar/snappy/1.1.9/lib" poetry install -``` - -For more details, here is what is needed: - -### install pytables -```console -brew install hdf5 -HDF5_DIR="/opt/homebrew/Cellar/hdf5/1.12.1/" poetry run pip install tables -``` - -### install python-snappy -```console -brew install snappy -CPPFLAGS="-I/opt/homebrew/Cellar/snappy/1.1.9/include -L/opt/homebrew/Cellar/snappy/1.1.9/lib" poetry run pip install python-snappy -``` diff --git a/peakina/cache.py b/peakina/cache.py index 14060baf..26043ae2 100644 --- a/peakina/cache.py +++ b/peakina/cache.py @@ -1,11 +1,13 @@ +import warnings from abc import ABCMeta, abstractmethod +from collections.abc import Callable from contextlib import suppress from datetime import timedelta from enum import Enum from functools import lru_cache, wraps from pathlib import Path from time import monotonic_ns, time -from typing import Any, Callable, TypedDict +from typing import Any, TypedDict import pandas as pd @@ -18,17 +20,25 @@ class InMemoryCached(TypedDict): class CacheEnum(str, Enum): MEMORY = "memory" + # FIXME: to be removed in v0.15.0 HDF = "hdf" + PICKLE = "pickle" class Cache(metaclass=ABCMeta): @staticmethod def get_cache(kind: CacheEnum, *args: Any, **kwargs: Any) -> "Cache": - ALL_CACHES = { - CacheEnum.MEMORY: InMemoryCache, - CacheEnum.HDF: HDFCache, - } - return ALL_CACHES[kind](*args, **kwargs) # type: ignore[no-any-return] + if kind == CacheEnum.HDF: + warnings.warn( + "HDF Cache has been removed in v0.14.0, PickleCache will be used instead. " + "This will be an error in v0.15.0, please use CacheEnum.PICKLE instead", + DeprecationWarning, + ) + kind = CacheEnum.PICKLE + if kind == CacheEnum.PICKLE: + return PickleCache(*args, **kwargs) + else: + return InMemoryCache(*args, **kwargs) @staticmethod def should_invalidate( @@ -88,11 +98,13 @@ def delete(self, key: str) -> None: del self._cache[key] -class HDFCache(Cache): - META_DF_KEY = "__meta__" +META_DF_KEY = "__meta__" + +class PickleCache(Cache): def __init__(self, cache_dir: str | Path) -> None: self.cache_dir = Path(cache_dir).resolve() + self._meta_df_key = self.cache_dir / META_DF_KEY def get_metadata(self) -> pd.DataFrame: """ @@ -101,20 +113,14 @@ def get_metadata(self) -> pd.DataFrame: If metadata file is not found or is corrupted, an empty one is recreated. """ try: - # We manually instantiate the HDFStore to be able to close it no matter what - # See https://github.com/pandas-dev/pandas/pull/28429 for more infos - store = pd.HDFStore(self.cache_dir / self.META_DF_KEY, mode="r") - try: - metadata = pd.read_hdf(store) - finally: - store.close() + metadata = pd.read_pickle(self._meta_df_key) except Exception: # catch all, on purpose metadata = pd.DataFrame(columns=["key", "mtime", "created_at"]) self.set_metadata(metadata) return metadata def set_metadata(self, df: pd.DataFrame) -> None: - df.to_hdf(self.cache_dir / self.META_DF_KEY, self.META_DF_KEY, mode="w") + df.to_pickle(self._meta_df_key) def get( self, key: str, mtime: float | None = None, expire: timedelta | None = None @@ -135,7 +141,7 @@ def get( self.delete(key) try: - return pd.read_hdf(self.cache_dir / key) + return pd.read_pickle(self.cache_dir / key) except FileNotFoundError: raise KeyError(key) @@ -148,7 +154,7 @@ def set(self, key: str, value: pd.DataFrame, mtime: float | None = None) -> None metadata = metadata[metadata.key != key] # drop duplicates metadata = pd.concat([metadata, pd.Series(infos).to_frame().T], ignore_index=True) self.set_metadata(metadata) - value.to_hdf(self.cache_dir / key, key, mode="w") + value.to_pickle(self.cache_dir / key) except OSError: self.delete(key) raise diff --git a/poetry.lock b/poetry.lock index 04d1ce0e..6cd6af45 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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">=2.9.2,<4.0.0" pydantic = "^2.4.2" python-slugify = ">=5.0.2,<9.0.0" s3fs = ">=2022.1,<2025.0" -tables = "^3.7.0" urllib3 = ">=1.26.8,<3.0.0" xlrd = "^2.0.1" xmltodict = ">=0.12.0,<1" diff --git a/tests/test_cache.py b/tests/test_cache.py index 6754a350..e06ec2be 100644 --- a/tests/test_cache.py +++ b/tests/test_cache.py @@ -6,7 +6,7 @@ import pytest from pandas.testing import assert_frame_equal -from peakina.cache import Cache, CacheEnum, HDFCache, InMemoryCache +from peakina.cache import Cache, CacheEnum, InMemoryCache, PickleCache @pytest.fixture @@ -31,12 +31,12 @@ def test_inmemory_cache(df_test): c1.get("key") -def test_hdf_cache(mocker, tmp_path, df_test): - """two hdf caches pointing to the same directory are equivalent""" +def test_pickle_cache(mocker, tmp_path, df_test): + """two pickle caches pointing to the same directory are equivalent""" c1 = Cache.get_cache(CacheEnum.HDF, cache_dir=tmp_path) - c2 = Cache.get_cache(CacheEnum.HDF, cache_dir=tmp_path) - assert isinstance(c1, HDFCache) - assert isinstance(c2, HDFCache) + c2 = Cache.get_cache(CacheEnum.PICKLE, cache_dir=tmp_path) + assert isinstance(c1, PickleCache) + assert isinstance(c2, PickleCache) c1.set("key", df_test) assert c1.get_metadata().shape == (1, 3) @@ -49,7 +49,7 @@ def test_hdf_cache(mocker, tmp_path, df_test): with pytest.raises(KeyError): c1.get("key") - mocker.patch.object(df_test, "to_hdf").side_effect = IOError("disk full") + mocker.patch.object(df_test, "to_pickle").side_effect = IOError("disk full") with pytest.raises(OSError): c1.set("key", df_test) assert len(c1.get_metadata()) == 0 @@ -84,20 +84,3 @@ def test_cache_expiration(cache, df_test, mocker): assert_frame_equal(cache.get("key", expire=timedelta(days=10)), df_test) with pytest.raises(KeyError): cache.get("key", expire=timedelta(days=8)) - - -def test_hdf_store_closed_on_error(df_test, mocker, tmp_path): - """it should not crash if HDF is not valid - - i.e. if `read_hdf` raises an AssertionError and doesn't close the HDF store - """ - c1 = Cache.get_cache(CacheEnum.HDF, cache_dir=tmp_path) - assert isinstance(c1, HDFCache) - c1.set("key", df_test) - c1.set_metadata(df_test) - # cf. https://github.com/pandas-dev/pandas/issues/28430: an exception might - # occur in `read_hdf` leaving the HDF store opened. - mocker.patch("pandas.io.pytables.HDFStore.select").side_effect = AssertionError( - "gaps in blocks ref_loc" - ) - assert c1.get_metadata().shape == (0, 3)