diff --git a/bin/CountSNPASE.py b/bin/CountSNPASE.py
index d4f3d13..56b2159 100644
--- a/bin/CountSNPASE.py
+++ b/bin/CountSNPASE.py
@@ -257,6 +257,7 @@ def CIGAR_to_Genomic_Positions(cigar_types, cigar_vals, pos):
         sleep(2)    # Pause for two seconds to make sure job is properly submitted
 
     # Now wait and check for all jobs to complete every so long
+    sys.stderr.write('Waiting for jobs to finish...\n')
     done = False
     while done is False:
         tot_done = 0
@@ -271,6 +272,8 @@ def CIGAR_to_Genomic_Positions(cigar_types, cigar_vals, pos):
 
         sleep(10)
 
+    sys.stderr.write('All jobs complete\n')
+
     # Once the jobs are done, concatenate all of the counts into one file.
     # Initialize dictionaries