From 0a945cf3d70c96387e7845ee201ade6e5add61b8 Mon Sep 17 00:00:00 2001
From: tma1 <107221080+tma1@users.noreply.github.com>
Date: Wed, 14 Aug 2024 14:26:14 -0400
Subject: [PATCH] Update HSCLO_GENCODE.R

---
 petagraph/code/preprocessing/HSCLO_GENCODE.R | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/petagraph/code/preprocessing/HSCLO_GENCODE.R b/petagraph/code/preprocessing/HSCLO_GENCODE.R
index e3f75f2..4ac7cb9 100644
--- a/petagraph/code/preprocessing/HSCLO_GENCODE.R
+++ b/petagraph/code/preprocessing/HSCLO_GENCODE.R
@@ -1 +1,3 @@
-for (i in 1:295559) {l <- floor(as.numeric(G[i,2])/1000)*1000; if (G[i,2]>l) {L[i,3] = paste("HSCLO"," ",G[i,6],".",l+1,"-",l+1000,sep = "")} else {L[i,3] = paste("HSCLO"," ",G[i,6],".",l-999,"-",l,sep = "")}}
\ No newline at end of file
+#THis scripts creates GENCODE mapping of transcript and genes found in Petgraph to HSCLO nodes at 1kbp resolution
+for (i in 1:295559) {l <- floor(as.numeric(G[i,2])/1000)*1000; 
+if (G[i,2]>l) {L[i,3] = paste("HSCLO"," ",G[i,6],".",l+1,"-",l+1000,sep = "")} else {L[i,3] = paste("HSCLO"," ",G[i,6],".",l-999,"-",l,sep = "")}}