obo-config.yaml

name: OBO Foundry
title: The OBO Foundry
markdown: kramdown
highlighter: rouge
baseurl: /
imgurl: /images
repo: https://github.com/OBOFoundry/OBOFoundry.github.io/
repo_src: https://github.com/OBOFoundry/OBOFoundry.github.io/blob/master/
author:
  name: OBO Technical WG
ontologies:
  - activity_status: active
    build: {checkout: 'git clone https://github.com/EBISPOT/duo.git', path: ., system: git}
    contact: {email: mcourtot@gmail.com, github: mcourtot, label: Melanie Courtot}
    dependencies:
      - {id: iao}
      - {id: bfo}
    description: DUO is an ontology which represent data use conditions.
    homepage: https://github.com/EBISPOT/DUO
    id: duo
    jobs:
      - {id: 'https://travis-ci.org/EBISPOT/DUO', type: travis-ci}
    layout: ontology_detail
    license: {label: CC-BY, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
              url: 'http://creativecommons.org/licenses/by/3.0/'}
    ontology_purl: http://purl.obolibrary.org/obo/duo.owl
    products:
      - {id: duo.owl, ontology_purl: 'http://purl.obolibrary.org/obo/duo.owl'}
    title: The Data Use Ontology
    tracker: https://github.com/EBISPOT/DUO/issues
    preferred_root_term:
      - http://purl.obolibrary.org/obo/DUO_0000001
      - http://purl.obolibrary.org/obo/DUO_0000017
      - http://purl.obolibrary.org/obo/OBI_0000066
  - activity_status: active
    browsers:
      - {label: Monarch, title: Monarch Initiative Disease Browser, url: 'https://monarchinitiative.org/disease/MONDO:0019609'}
    canonical: mondo.owl
    contact: {email: vasilevs@ohsu.edu, github: nicolevasilevsky, label: Nicole Vasilevsky}
    description: An ontology that harmonizes multiple disease resources.
    domain: disease
    homepage: https://monarch-initiative.github.io/mondo
    id: mondo
    label: Mondo
    layout: ontology_detail
    license: {label: CC BY 3.0, logo: 'http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png',
              url: 'http://creativecommons.org/licenses/by/3.0/'}
    mailing_list: https://groups.google.com/group/mondo-users
    ontology_purl: http://purl.obolibrary.org/obo/mondo.owl
    products:
      - {description: 'Complete ontology, plus inter-ontology equivalence axioms. Uses
      MONDO IDs.', format: owl-rdf/xml, id: mondo.owl, is_canonical: true, ontology_purl: 'http://purl.obolibrary.org/obo/mondo.owl',
         title: Main OWL edition}
      - {derived_from: mondo.owl, description: 'As OWL, but omits equivalence axioms.
      xrefs can be used as proxy for equivalence. Uses Mondo IDs', format: obo, id: mondo.obo,
         ontology_purl: 'http://purl.obolibrary.org/obo/mondo.obo', title: obo-format edition}
      - {derived_from: mondo.owl, description: Equivalent to the OWL edition, format: obo,
         id: mondo.json, ontology_purl: 'http://purl.obolibrary.org/obo/mondo.json', title: json
                                                                                       edition}
    taxon: {id: 'NCBITaxon:33208', label: Metazoa}
    title: Mondo Disease Ontology
    tracker: https://github.com/monarch-initiative/mondo-build/issues
    usages:
      - description: Mondo is used by the Monarch Initiative for disease annotations.
        examples:
          - {url: 'https://monarchinitiative.org/phenotype/HP:0001300#diseases'}
        reference: https://academic.oup.com/nar/article/45/D1/D712/2605791
        type: annotation
        user: https://monarchinitiative.org/
  - activity_status: active
    biosharing: https://www.biosharing.org/bsg-000016
    browsers:
      - label: RGD
        title: Gene Ontology AmiGO 2 Browser
        url: http://rgd.mcw.edu/rgdweb/ontology/view.html?acc_id=UBERON:0001062
      - label: AmiGO (SUBSET)
        title: Gene Ontology AmiGO 2 Browser
        url: http://amigo.geneontology.org/amigo/term/UBERON:0001062#display-lineage-tab
      - label: Bgee (gene expression)
        title: Bgee gene expression queries
        url: http://bgee.org/?page=gene
      - label: FANTOM5
        title: FANTOM5 Data Portal
        url: http://fantom.gsc.riken.jp/5/sstar/UBERON:0001890
      - label: KnowledgeSpace
        title: INCF KnowledgeSpace Portal
        url: https://knowledge-space.org/index.php/pages/view/UBERON:0000061
    build:
      checkout: svn --ignore-externals co http://svn.code.sf.net/p/obo/svn/uberon/trunk
      email_cc: cjmungall@lbl.gov
      infallible: 1
      method: vcs
      system: svn
    canonical: uberon.owl
    contact:
      email: cjmungall@lbl.gov
      label: Chris Mungall
    dependencies:
      - id: go
        subset: uberon/go_import.owl
      - id: cl
        subset: uberon/cl_import.owl
      - id: chebi
        subset: uberon/chebi_import.owl
      - id: pr
        subset: uberon/pr_import.owl
    depicted_by: http://uberon.github.io/images/u-logo.jpg
    description: An integrated cross-species anatomy ontology covering animals and bridging
      multiple species-specific ontologies
    domain: anatomy
    exampleClass: UBERON_0002046
    funded_by:
      - NIH R24OD011883
      - NIH R01HG004838
      - NIH P41HG002273
      - NSF DEB-0956049
    google_plus: +UberonOrg
    homepage: http://uberon.org
    id: uberon
    label: Uberon
    layout: ontology_detail
    license:
      label: CC-BY
      logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
      url: http://creativecommons.org/licenses/by/3.0/
    mailing_list: https://lists.sourceforge.net/lists/listinfo/obo-anatomy
    ontology_purl: http://purl.obolibrary.org/obo/uberon.owl
    page: http://en.wikipedia.org/wiki/Uberon
    products:
      - description: core ontology
        id: uberon.owl
        is_canonical: true
        ontology_purl: http://purl.obolibrary.org/obo/uberon.owl
        title: Uberon
        type: owl:Ontology
      - description: Axioms defined within Uberon and to be used in imports for other
          ontologies
        id: uberon/uberon-base.owl
        ontology_purl: http://purl.obolibrary.org/obo/uberon/uberon-base.owl
        page: https://github.com/INCATools/ontology-development-kit/issues/50
        title: Uberon base ontology
      - description: Uberon extended
        id: uberon/ext.owl
        mireots_from: ncbitaxon
        ontology_purl: http://purl.obolibrary.org/obo/uberon/ext.owl
        title: Uberon edition that includes subsets of other ontologies and axioms connecting
          to them
        type: owl:Ontology
      - description: Uberon edition that excludes external ontologies and most relations
        format: obo
        id: uberon/basic.obo
        ontology_purl: http://purl.obolibrary.org/obo/uberon/basic.obo
        title: Uberon basic
        type: obo-basic-ontology
      - connects:
          - id: uberon
          - id: zfa
        description: Taxonomic equivalence axioms connecting zebrafish-specific classes
          to generic uberon counterparts
        id: uberon/bridge/uberon-bridge-to-zfa.owl
        ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-zfa.owl
        page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
        title: Uberon bridge to ZFA
        type: BridgeOntology
      - connects:
          - id: uberon
          - id: ma
        description: Taxonomic equivalence axioms connecting adult mouse specific classes
          to generic uberon counterparts
        id: uberon/bridge/uberon-bridge-to-ma.owl
        ontology_purl: http://purl.obolibrary.org/obo/uberon/bridge/uberon-bridge-to-ma.owl
        page: https://github.com/obophenotype/uberon/wiki/inter-anatomy-ontology-bridge-ontologies
        title: Uberon bridge to MA
        type: BridgeOntology
      - description: Extended uberon plus all metazoan ontologies
        id: uberon/composite-metazoan.owl
        mireots_from: ehdaa2
        ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-metazoan.owl
        page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
        taxon: Metazoa
        title: Uberon composite metazoan ontology
        type: MergedOntology
      - id: uberon/composite-vertebrate.owl
        mireots_from: ehdaa2
        ontology_purl: http://purl.obolibrary.org/obo/uberon/composite-vertebrate.owl
        page: https://github.com/obophenotype/uberon/wiki/Multi-species-composite-ontologies
        taxon: Metazoa
        title: Uberon composite vertebrate ontology
        type: MergedOntology
    publications:
      - id: http://www.ncbi.nlm.nih.gov/pubmed/22293552
        title: Uberon, an integrative multi-species anatomy ontology
      - id: http://www.ncbi.nlm.nih.gov/pubmed/25009735
        title: Unification of multi-species vertebrate anatomy ontologies for comparative
          biology in Uberon
    redirects:
      - match: releases/
        url: http://svn.code.sf.net/p/obo/svn/uberon/releases/
      - match: ''
        url: http://berkeleybop.org/ontologies/uberon/
    releases: http://purl.obolibrary.org/obo/uberon/releases/
    repository: https://github.com/obophenotype/uberon
    taxon:
      id: NCBITaxon:33208
      label: Metazoa
    title: Uberon multi-species anatomy ontology
    tracker: https://github.com/obophenotype/uberon/issues
    twitter: uberanat
    type: owl:Ontology
    usages:
      - description: Bgee is a database to retrieve and compare gene expression patterns
          between animal species. Bgee in using Uberon to annotate the site of expression,
          and Bgee curators one the major contributors to the ontology.
        examples:
          - description: Uberon terms used to annotate expression of human hemoglobin subunit
              beta
            url: http://bgee.org/?page=gene&gene_id=ENSG00000244734
        seeAlso: https://www.biosharing.org/biodbcore-000228
        type: annotation
        user: http://bgee.org/
      - description: The National Human Genome Research Institute (NHGRI) launched a public
          research consortium named ENCODE, the Encyclopedia Of DNA Elements, in September
          2003, to carry out a project to identify all functional elements in the human
          genome sequence. The ENCODE DCC users Uberon to annotate samples
        reference: https://doi.org/10.1093/database/bav010
        seeAlso: https://www.biosharing.org/biodbcore-000034
        type: annotation
        user: https://www.encodeproject.org/
      - description: FANTOM5 is using Uberon and CL to annotate samples allowing for transcriptome
          analyses with cell-type and tissue-level specificity.
        examples:
          - description: FANTOM5 samples annotated to telencephalon or its parts
            url: http://fantom.gsc.riken.jp/5/sstar/UBERON:0001893
        type: annotation
        user: http://fantom5-collaboration.gsc.riken.jp/
      - description: Querying expression and phenotype data
        type: query
        user: https://monarchinitiative.org/
      - description: Querying for functional annotations relevant to a tissue
        examples:
          - description: GO annotations relevant to the uberon class for brain
            url: http://amigo.geneontology.org/amigo/term/UBERON:0000955
        label: GO Database
        type: query
        user: https://geneontology.org/
      - description: The Phenoscape project is both a major driver of and contributor
          to Uberon, contibuting thousands of terms. The teleost (bony fishes) component
          of Uberon was derived from the Teleost Anatomy Ontology, developed by the Phenoscape
          group. Most of the high level design of the skeletal system comes from the Vertebrate
          Skeletal Anatomy Ontology (VSAO), also created by the Phenoscape group. Phenoscape
          curators continue to extend the ontology, covering a wide variety of tetrapod
          structures, with an emphasis on the appendicular system.
        label: Phenoscape
        user: http://phenoscape.org
      - label: Neuroscience Information Framework
        type: Database
        url: https://neuinfo.org/
      - label: SciCrunch
        type: Database
        url: https://scicrunch.org/
      - label: SCPortalen
        reference: https://doi.org/10.1093/nar/gkx949
        type: Database
        url: http://single-cell.clst.riken.jp/
      - description: ChEMBL uses Uberon to describe organ/tissue information in assays
        label: ChEMBL
        reference: https://doi.org/10.1093/nar/gky1075
        type: Database
        url: https://www.ebi.ac.uk/chembl/
    wikidata_template: https://en.wikipedia.org/wiki/Template:Uberon
  - activity_status: active
    browsers:
      - label: AmiGO
        title: Gene Ontology AmiGO 2 Browser
        url: http://amigo.geneontology.org/amigo/term/GO:0008150#display-lineage-tab
    contact:
      email: suzia@stanford.edu
      label: Suzi Aleksander
    dependencies:
      - id: uberon
        subset: go/extensions/uberon_import.owl
      - id: cl
        subset: go/extensions/cl_import.owl
      - id: ncbitaxon
        subset: go/extensions/ncbitaxon_import.owl
      - id: ro
        subset: go/extensions/ro_import.owl
      - connects:
          - id: nifstd
          - id: go
        description: Bridging axioms between nifstd and go
        id: go/extensions/go-bridge-to-nifstd.owl
        publications:
          - id: http://www.ncbi.nlm.nih.gov/pubmed/24093723
            title: 'The Gene Ontology (GO) Cellular Component Ontology: integration with
        SAO (Subcellular Anatomy Ontology) and other recent developments.'
        title: GO bridge to NIFSTD
        type: BridgeOntology
    depicted_by: http://geneontology.org/assets/go-logo-icon.mini.png
    description: An ontology for describing the function of genes and gene products
    domain: biology
    facebook: https://www.facebook.com/Gene-Ontology-305908656519/
    homepage: http://geneontology.org/
    id: go
    in_foundry_order: 1
    integration_server: http://build.berkeleybop.org/view/GO
    label: GO
    layout: ontology_detail
    license:
      label: CC BY 4.0
      logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
      url: https://creativecommons.org/licenses/by/4.0/
    ontology_purl: http://purl.obolibrary.org/obo/go.owl
    products:
      - description: The main ontology in OWL. This is self contained and does not have
          connections to other OBO ontologies
        id: go.owl
        ontology_purl: http://purl.obolibrary.org/obo/go.owl
        page: http://geneontology.org/page/download-ontology
        title: GO (OWL edition)
      - description: Equivalent to go.owl, in obo format
        id: go.obo
        ontology_purl: http://purl.obolibrary.org/obo/go.obo
        page: http://geneontology.org/page/download-ontology
        title: GO (OBO Format edition)
      - description: Equivalent to go.owl, in obograph json format
        id: go.json
        ontology_purl: http://purl.obolibrary.org/obo/go.json
        page: https://github.com/geneontology/obographs/
        title: GO (JSON edition)
      - description: The main ontology plus axioms connecting to select external ontologies,
          with subsets of those ontologies
        id: go/extensions/go-plus.owl
        ontology_purl: http://purl.obolibrary.org/obo/go/extensions/go-plus.owl
        page: http://geneontology.org/page/download-ontology
        title: GO-Plus
      - description: The main ontology plus axioms connecting to select external ontologies,
          excluding the external ontologies themselves
        id: go/go-base.owl
        ontology_purl: http://purl.obolibrary.org/obo/go/go-base.owl
        page: http://geneontology.org/page/download-ontology
        title: GO Base Module
      - description: As go-plus.owl, in obographs json format
        id: go/extensions/go-plus.json
        ontology_purl: http://purl.obolibrary.org/obo/go/extensions/go-plus.json
        page: https://github.com/geneontology/obographs/
        title: GO-Plus
      - description: The main ontology plus axioms connecting to select external ontologies
        id: go/go-basic.obo
        ontology_purl: http://purl.obolibrary.org/obo/go/go-basic.obo
        page: http://geneontology.org/page/download-ontology
        title: GO-Basic, Filtered, for use with legacy tools
      - description: As go-basic.obo, in json format
        id: go/go-basic.json
        ontology_purl: http://purl.obolibrary.org/obo/go/go-basic.json
        page: http://geneontology.org/page/download-ontology
        title: GO-Basic, Filtered, for use with legacy tools (JSON)
      - description: Classes added to ncbitaxon for groupings such as prokaryotes
        id: go/extensions/go-taxon-groupings.owl
        ontology_purl: http://purl.obolibrary.org/obo/go/extensions/go-taxon-groupings.owl
        page: http://geneontology.org/page/download-ontology
        title: GO Taxon Groupings
      - description: Equivalent to go.owl, but released daily. Note the snapshot release
          is not archived.
        id: go/snapshot/go.owl
        ontology_purl: http://purl.obolibrary.org/obo/go/snapshot/go.owl
        page: http://geneontology.org/page/download-ontology
        title: GO (OWL edition), daily snapshot release
      - description: Equivalent to go.owl, but released daily. Note the snapshot release
          is not archived.
        id: go/snapshot/go.obo
        ontology_purl: http://purl.obolibrary.org/obo/go/snapshot/go.obo
        page: http://geneontology.org/page/download-ontology
        title: GO (OBO Format edition), daily snapshot release
    review:
      date: 2010
    taxon:
      id: NCBITaxon:1
      label: All life
    title: Gene Ontology
    tracker: https://github.com/geneontology/go-ontology/issues/
    twitter: news4go
    usages:
      - description: The GO ontology is used by the GO consortium for functional annotation
          of genes
        examples:
          - description: annotations to transmembrane transport
            url: http://amigo.geneontology.org/amigo/term/GO:0055085
        type: annotation
        user: http://geneontology.org
  - activity_status: active
    alternatePrefix: ChEBI
    browsers:
      - label: CHEBI
        title: EBI CHEBI Browser
        url: http://www.ebi.ac.uk/chebi/chebiOntology.do?treeView=true&chebiId=CHEBI:24431#graphView
    build:
      infallible: 1
      method: obo2owl
      source_url: ftp://ftp.ebi.ac.uk/pub/databases/chebi/ontology/chebi.obo
    contact:
      email: amalik@ebi.ac.uk
      github: amalik01
      label: Adnan Malik
    depicted_by: https://www.ebi.ac.uk/chebi/images/ChEBI_logo.png
    description: A structured classification of molecular entities of biological interest
      focusing on 'small' chemical compounds.
    domain: biochemistry
    homepage: http://www.ebi.ac.uk/chebi
    id: chebi
    in_foundry_order: 1
    layout: ontology_detail
    license:
      label: CC-BY 4.0
      logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
      url: https://creativecommons.org/licenses/by/4.0/
    ontology_purl: http://purl.obolibrary.org/obo/chebi.owl
    page: http://www.ebi.ac.uk/chebi/init.do?toolBarForward=userManual
    products:
      - id: chebi.owl
        ontology_purl: http://purl.obolibrary.org/obo/chebi.owl
      - id: chebi.obo
        ontology_purl: http://purl.obolibrary.org/obo/chebi.obo
      - id: chebi.owl.gz
        ontology_purl: http://purl.obolibrary.org/obo/chebi.owl.gz
        title: chebi, compressed owl
      - id: chebi/chebi_lite.obo
        ontology_purl: http://purl.obolibrary.org/obo/chebi/chebi_lite.obo
        title: chebi_lite, no syns or xrefs
      - id: chebi/chebi_core.obo
        ontology_purl: http://purl.obolibrary.org/obo/chebi/chebi_core.obo
        title: chebi_core, no xrefs
    publications:
      - id: http://europepmc.org/article/MED/26467479
        title: 'ChEBI in 2016: Improved services and an expanding collection of metabolites.'
    review:
      date: 2010
    title: Chemical Entities of Biological Interest
    tracker: https://github.com/ebi-chebi/ChEBI/issues
    twitter: chebit
    usages:
      - description: Rhea uses CHEBI to annotate reaction participants
        examples:
          - description: Query for all usages of CHEBI:29748 (chorismate)
            url: https://www.rhea-db.org/searchresults?q=CHEBI:29748
        user: https://www.rhea-db.org/
      - description: ZFIN uses CHEBI to annotate experiments
        examples:
          - description: A curated zebrafish experiment involving exposure to (5Z,8Z,14Z)-11,12-dihydroxyicosatrienoic
              acid (CHEBI:63969)
            url: http://zfin.org/action/expression/experiment?id=ZDB-EXP-190627-10
        user: http://zfin.org
  - DO wiki: http://diseaseontology.sourceforge.net/
    activity_status: active
    browsers:
      - label: DO
        title: DO Browser
        url: http://www.disease-ontology.org/
    build:
      infallible: 1
      method: obo2owl
      source_url: https://raw.githubusercontent.com/DiseaseOntology/HumanDiseaseOntology/master/src/ontology/doid.obo
    contact:
      email: lynn.schriml@gmail.com
      github: lschriml
      label: Lynn Schriml
    description: An ontology for describing the classification of human diseases organized
      by etiology.
    domain: disease
    facebook: https://www.facebook.com/diseaseontology
    homepage: http://www.disease-ontology.org
    id: doid
    in_foundry_order: 1
    layout: ontology_detail
    license:
      label: CC0 1.0 Universal
      logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/cc-zero.png
      url: https://creativecommons.org/publicdomain/zero/1.0/
    ontology_purl: http://purl.obolibrary.org/obo/doid.owl
    products:
      - id: doid.owl
        ontology_purl: http://purl.obolibrary.org/obo/doid.owl
        title: Disease Ontology, OWL format. This file contains DO's is_a asserted hierarchy
          plus equivalent axioms to other OBO Foundry ontologies.
      - id: doid.obo
        ontology_purl: http://purl.obolibrary.org/obo/doid.obo
        title: Disease Ontology, OBO format. This file omits the equivalent axioms.
    publications:
      - id: http://www.ncbi.nlm.nih.gov/pubmed/?term=25348409
        title: 'Disease Ontology 2015 update: an expanded and updated database of human
      diseases for linking biomedical knowledge through disease data'
    review:
      date: 2015
      document:
        label: PDF
        link: https://drive.google.com/open?id=0B8vqEgF1N0NIZ082U2JETHlSTGs
    taxon:
      id: NCBITaxon:9606
      label: Homo sapiens
    title: Human Disease Ontology
    tracker: https://github.com/DiseaseOntology/HumanDiseaseOntology/issues
    twitter: diseaseontology
    usages:
      - description: MGI disease model annotations use DO
        examples:
          - description: Human genes and mouse homology associated with nail diseases
            url: http://www.informatics.jax.org/disease/DOID:4123
        user: http://www.informatics.jax.org/disease
  - activity_status: active
    contact:
      contact: mellybelly
      email: haendel@ohsu.edu
      label: Melissa Haendel
    description: NCI Thesaurus (NCIt)is a reference terminology that includes broad
      coverage of the cancer domain, including cancer related diseases, findings and
      abnormalities. The NCIt OBO Edition aims to increase integration of the NCIt with
      OBO Library ontologies. NCIt OBO Edition releases should be considered experimental.
    homepage: https://github.com/NCI-Thesaurus/thesaurus-obo-edition
    id: ncit
    layout: ontology_detail
    license:
      label: CC-BY 4.0
      logo: http://mirrors.creativecommons.org/presskit/buttons/80x15/png/by.png
      url: https://creativecommons.org/licenses/by/4.0/
    ontology_purl: http://purl.obolibrary.org/obo/ncit.owl
    products:
      - description: A direct transformation of the standard NCIt content using OBO-style
          term and ontology IRIs and annotation properties.
        id: ncit.owl
        ontology_purl: http://purl.obolibrary.org/obo/ncit.owl
        title: NCIt OBO Edition OWL format
      - id: ncit.obo
        ontology_purl: http://purl.obolibrary.org/obo/ncit.obo
        title: NCIt OBO Edition OBO format
      - description: This version replaces NCIt terms with direct references to terms
          from other domain-specific OBO Library ontologies (e.g. cell types, cellular
          components, anatomy), supporting cross-ontology reasoning. The current release
          incorporates CL (cell types) and Uberon (anatomy).
        id: ncit/ncit-plus.owl
        mireots_from: uberon
        ontology_purl: http://purl.obolibrary.org/obo/ncit/ncit-plus.owl
        title: NCIt Plus
      - description: This is a subset extracted from NCIt Plus, based on the [NCIt Neoplasm
          Core value set](https://evs.nci.nih.gov/ftp1/NCI_Thesaurus/Neoplasm/About_Core.html)
          as a starting point.
        id: ncit/neoplasm-core.owl
        ontology_purl: http://purl.obolibrary.org/obo/ncit/neoplasm-core.owl
        title: NCIt Plus Neoplasm Core
    title: NCI Thesaurus OBO Edition
    tracker: https://github.com/NCI-Thesaurus/thesaurus-obo-edition/issues