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<!doctype html>
<html lang="en">
<script src="include.js"></script>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<meta name="description" content="">
<meta name="author" content="">
<link rel="icon" href="../../../../favicon.ico">
<title>TC18 main site</title>
<!-- Bootstrap core CSS -->
<link href="dist/css/bootstrap.min.css" rel="stylesheet">
<link rel="stylesheet" type="text/css" href="dist/css/custom.css">
</head>
<body>
<div id="headerSite"></div>
<nav contentMenu="menu.html" id="navMenu"
class=" navbar blurry navbar-expand-md navbar-dark navbar-dark mb-4 sticky-top"> </nav>
<script>includeHTML("contentMenu");</script>
<div id="site_content" class=" ml-0 mr-0">
<div class="row ml-3 mr-1">
<div class="col-12 text-justify ">
<h2>Data sets, Code, and Tools</h2>
<h3>Introduction</h3>
<p>The aim of this web page is to provide data sets and elementary codes
to researchers working on discrete geometry and mathematical morphology. The idea is to make it
easy for the community to try our own algorithms on the same image
examples as other researchers, as well as to try the algorithms of
other researchers. Obviously, feel free to send an e-mail to authors of these web pages
(see below) if you have comments.</p>
<h4>Table of content:</h4>
<ul>
<li><a href="#datasets">Data sets</a>: A collection of copyright free 2d and 3 images</li>
<li><a href="#code">Code</a>: Libraries and code for many common methods in discrete geometry and mathematical
morphology</li>
<li><a href="#tools">Tools</a>: Tools for common problems in discrete geometry and mathematical morphology
</li>
</ul>
<p><b>You think that your data set, code or tool should be listed here: just send a mail to <a
href="mailto:[email protected]">[email protected]</a></b></p>
<hr style="margin:60px;">
<h3 style="margin:60px;"> Data sets </h3>
<a class="shiftedAnchor" name="datasets"></a>
<ul>
<li><a class="shiftedAnchor" name="data"></a><a href="2D_images.html">2D images</a>
(binary, grayscale, color)
</li>
<li> <a href="3D_images.html">3D images</a> (binary, grayscale,
color, 3d mesh)
</li>
</ul>
<p>
<i>Note</i> : all the materials present in these web pages are
copyright free.
</p>
<hr style="margin:60px;">
<h3 style="margin:60px;"> Code</h3>
<a class="shiftedAnchor" name="code"></a>
<h4> Libraries</h4>
<table class="table-responsive-sm" style="width: 98%;" border="1">
<thead>
<tr>
<th width="50%">Description</th>
<th style="text-align: left; vertical-align: middle;" width="30%">Main Reference</th>
<th> Language </th>
<th>Download</th>
</tr>
</thead>
<tbody>
<tr>
<td width="50%">
<font color="green">DGtal</font> Digital Geometry Tools and Algorithms
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="http://www.dgtal.org/">go</a></td>
</tr>
<tr>
<td width="50%">
<font color="green">HIGRA</font> Hierarchical Graph Analysis
</td>
<td style="text-align: left; vertical-align: middle;" width="30%"><a href="#BIB_Perret2019">[Perret
2019]</a></td>
<td>C++/Python</td>
<td><a href="https://github.com/higra/Higra">go</a></td>
</tr>
<tr>
<td width="50%">
<font color="green">OLENA</font> Image processing, image recognition, and artificial vision
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="http://www.lrde.epita.fr/cgi-bin/twiki/view/Olena/">go</a></td>
</tr>
<tr>
<td width="50%">
<font color="green">ORFEO</font> Optical and Radar Federated Earth Observation
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="http://www.orfeo-toolbox.org/">go</a></td>
</tr>
<tr>
<td width="50%">
<font color="green">PINK</font> PINK Image Processing Library
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="https://perso.esiee.fr/~coupriem/Pink/doc/html">go</a></td>
</tr>
<tr>
<td width="50%">
<font color="green">VIGRA</font> Vision with Generic Algorithms
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="https://ukoethe.github.io/vigra/">go</a></td>
</tr>
</tbody>
</table>
<br>
<h4> Grid, cells, structures and topology</h4>
<a class="shiftedAnchor" name="grids"></a>
<i> and basic librairies to handle discrete objects...</i>
<table class="table-responsive-sm" style="width: 98%;" border="1">
<thead>
<tr>
<th width="50%">Description</th>
<th style="text-align: left; vertical-align: middle;" width="50%">Main Reference</th>
<th>Language</th>
<th>Download</th>
<th>Snapshots</th>
<th>Submitted by</th>
</tr>
</thead>
<tbody>
<tr>
<td width="50%">
<font color="green">Simplevol</font> a simple and powerful library to manipulate 3D images
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="http://liris.cnrs.fr/david.coeurjolly/Code/SimpleVol/">go</a></td>
<td>see <a href="3D_images.html">3D data set web page</a></td>
<td style="white-space: nowrap;">
<a href="mailto:[email protected]">D.Coeurjolly</a>
</td>
</tr>
<tr>
<td width="50%">The Npic library provides types and functions in C language to manipulate bitmap images of
dimension 2 to 6,
and command line tools that give access to the library functions (drawing, distance transforms, medial
axis,
converting file formats, and more). Some computations are multi-threaded with OpenMP.</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C</td>
<td><a href="http://pageperso.lif.univ-mrs.fr/~edouard.thiel/npic/index.html">go</a></td>
<td> </td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">E. Thiel</a></td>
</tr>
<tr>
<td width="50%">Skeletonization for 2D binary data by curvature</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C</td>
<td><a href="DataSets/Code/skeleton_by_curvature/">go</a></td>
<td> </td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">A. Imiya</a></td>
</tr>
<tr>
<td width="50%">Boundary Extraction for 3D binary image by Distance Transformation</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C</td>
<td><a href="DataSets/Code/boundary/">go</a></td>
<td><img src="DataSets/Code/boundary/sphere1.gif" width="100"></td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">A. Imiya</a></td>
</tr>
</tbody>
</table>
<p>
<font color="red"><b> See also:</b></font>
<ul>
<li> QVox in the <a href="#misc">Miscellaneous</a> section (implementation of thinning algorithms)</li>
</ul>
</p>
<h4> nD objects and recognition</h4>
<a class="shiftedAnchor" name="objects"></a>
<table class="table-responsive-sm" style="width: 98%;" border="1">
<thead>
<tr>
<th width="50%">Description</th>
<th style="text-align: left; vertical-align: middle;" width="50%">Main Reference</th>
<th> Language </th>
<th>Download</th>
<th> Snapshots</th>
<th> Submitted by </th>
</tr>
</thead>
<tbody>
<tr>
<td width="50%">Multigrid discrete volume generator with signature (area, curvature...) based on <font
color="green">Libvol</font>
</td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C++</td>
<td><a href="http://liris.cnrs.fr/david.coeurjolly/Code/SimpleVol/">go</a></td>
<td>see <a href="3D_images.html">3D data set web page</a></td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">D.Coeurjolly</a></td>
</tr>
<tr>
<td width="50%">Discrete Straight Line Segmentation based on Debled and Reveillès DSL </td>
<td style="text-align: left; vertical-align: middle;" width="30%">
<a href="#BIB_Debled1995">[DEBLED 1995]</a>
</td>
<td>C</td>
<td><a href="DataSets/Code/DSS/debled.c">debled.c</a></td>
<td><a href="DataSets/Code/DSS/cercle_segmentation.gif"><img
src="DataSets/Code/DSS/cercle_segmentation.gif" width="100"></a></td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">D.Coeurjolly</a></td>
</tr>
<tr>
<td width="50%">Digital plane recognition and digital plane preimage computation </td>
<td style="text-align: left; vertical-align: middle;" width="30%">---</td>
<td>C</td>
<td><a href="DataSets/Code/Preimage/preimage.html">go</a></td>
<td><a href="DataSets/Code/Preimage/poly_axis.gif"><img src="DataSets/Code/Preimage/poly_axis.gif"
width="100"></a></td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">D.Coeurjolly</a></td>
</tr>
<tr>
<td width="50%">Thick Line Segment Detection with Fast Directional Tracking</td>
<td style="text-align: left; vertical-align: middle;" width="30%"><a href="#BIB_Even2019"> [Even 2019]</a>
</td>
<td>C++</td>
<td><a href="https://github.com/evenp/FBSD/">go</a></td>
<td><img src="DataSets/Code/boundaryfbsd.png" width="100"></td>
<td style="white-space: nowrap;"><a href="mailto:[email protected]">P. Even</a></td>
</tr>
<!-- <tr> To be uncomment (requested to authors new link) -->
<!-- <td style="text-align: left; vertical-align: middle;">Fast -->
<!-- Digital Plane Recognition<br> -->
<!-- </td> -->
<!-- <td style="text-align: left; vertical-align: middle;"><a -->
<!-- href="DataSets/Bibliography/tc18_bib.html#GERARD_2003">[GERARD 2003]</a></td> -->
<!-- <td style="text-align: left; vertical-align: middle;">C<br> -->
<!-- </td> -->
<!-- <td style="text-align: left; vertical-align: middle;"><a -->
<!-- href="http://webloria.loria.fr/%7Edebled/plane/index.html">go</a><br> -->
<!-- </td> -->
<!-- <td style="text-align: left; vertical-align: middle;"> </td> -->
<!-- <td -->
<!-- style="text-align: left; vertical-align: middle; white-space: nowrap;"><a href="mailto:[email protected]">Y.Gerard</a>, <br> -->
<!-- <a href="mailto:[email protected]">I. Debled-Rennesson</a><br> -->
<!-- <a href="mailto:[email protected]">P. Zimmermann</a> </td> -->
<!-- </tr> -->
</tbody>
</table>
<h4><a name="objects"> Discrete distances and skeletons </a></h4>
<a name="distances"></a>
<table class="table-responsive-sm" style="width: 98%;" border="1">
<thead>
<tr>
<th width="50%">Description</th>
<th style="text-align: left; vertical-align: middle;" width="50%">Main Reference</th>
<th>Language</th>
<th>Download</th>
<th>Snapshots</th>
<th>Submitted by</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left; vertical-align: middle;">
hLutChamfer3D is a two-phase method that determines if
a G-symmetrical chamfer mask induces a norm and in this case,
computes the lookup tables and the test neighborhood based on
geometric properties of the chamfer balls.</td>
<td style="text-align: left; vertical-align: middle;"><a href="#BIB_Normand2009">[Normand_2008]</a></td>
<td style="text-align: left; vertical-align: middle;">C</td>
<td style="text-align: left; vertical-align: middle;"><a
href="http://www.irccyn.ec-nantes.fr/~normand/hLutChamfer3D/">go</a></td>
<td style="text-align: left; vertical-align: middle;"></td>
<td style="text-align: left; vertical-align: middle; white-space: nowrap;"><a
href="mailto:[email protected]">N. Normand</a></td>
</tr>
<tr>
<td colspan="1" rowspan="2" style="text-align: left; vertical-align: middle;">Program to compute optimal
coefficients of 3-D chamfer norms.</td>
<td style="text-align: left; vertical-align: middle;"><a href="#BIB_Fouard2005">[FOUARD 2005]</a></td>
<td style="text-align: left; vertical-align: middle;">J<small>AVA</small></td>
<td style="text-align: left; vertical-align: middle;"><a href="DataSets/Code/Fouard/">go</a></td>
<td style="text-align: left; vertical-align: middle;"></td>
<td style="text-align: left; vertical-align: middle; white-space: nowrap;"><a
href="mailto:[email protected]">C. Fouard</a> <a
href="mailto:[email protected]">G. Malandain</a></td>
</tr>
<tr>
<td style="vertical-align: middle;"><a href="#BIB_Fouard2005">[FOUARD 2005]</a> <a
href="#BIB_Malandain2005">[MALANDAIN 2005]</a></td>
<td style="vertical-align: middle;">C</td>
<td style="vertical-align: middle;"><a
href="http://www-sop.inria.fr/epidaure/personnel/Gregoire.Malandain/codes/chamfer-coefficients.html">go</a>
</td>
<td style="vertical-align: middle;"></td>
<td style="vertical-align: middle;"><a href="mailto:[email protected]">G. Malandain</a>
<a href="mailto:[email protected]">C. Fouard</a>
</td>
</tr>
<tr>
<td style="text-align: left; vertical-align: middle;">3D Squared Euclidean Distance Transform in optimal
time</td>
<td style="text-align: left; vertical-align: middle;"><a href="#BIB_Saito1994">[SAITO 1994]</a>, <a
href="#BIB_Hirata1996">[HIRATA_1996]</a> and <a href="#BIB_Meijster2002">[MEIJSTER 2000]</a></td>
<td style="text-align: left; vertical-align: middle;">C++</td>
<td style="text-align: left; vertical-align: middle;"><a href="DataSets/Code/SEDT/index.html">go</a></td>
<td style="text-align: left; vertical-align: middle;"></td>
<td style="text-align: left; vertical-align: middle; white-space: nowrap;"><a
href="mailto:[email protected]">D. Coeurjolly</a></td>
</tr>
<tr>
<td style="text-align: left; vertical-align: middle;">3D Discrete Voronoi diagram computation</td>
<td style="text-align: left; vertical-align: middle;"><a href="#BIB_Saito1994">[SAITO 1994]</a>, <a
href="#BIB_Hirata1996">[HIRATA_1996]</a> and <a href="#BIB_Meijster2002">[MEIJSTER 2000]</a></td>
<td style="text-align: left; vertical-align: middle;">C++</td>
<td style="text-align: left; vertical-align: middle;"><a
href="DataSets/Code/SEDTVoronoi/index.html">go</a></td>
<td style="text-align: left; vertical-align: middle;"></td>
<td style="text-align: left; vertical-align: middle; white-space: nowrap;"><a
href="mailto:[email protected]">D. Coeurjolly</a></td>
</tr>
</tbody>
</table>
<p>
<font color="red"><b> See also:</b></font>
<ul>
<li> The Npic library in the <a href="#grids">Grid, cells, structures and topology</a> section.</li>
</ul>
</p>
<h4>Features extraction and similarity measures</h4>
<a class="shiftedAnchor" name="features">
<font color="red"><b> See also:</b></font>
</a>
<ul>
<li> The multigrid discrete volume generator with signature (area, curvature...) in the </a><a
href="#objects">nD objects and recognition section. </li>
</ul>
<h4><a id="misc"></a>Miscellaneous </h4>
<table class="table-responsive-sm" style="width: 98%;" border="1">
<thead>
<tr>
<th width="50%">Description</th>
<th style="text-align: left; vertical-align: middle;" width="50%">Main Reference</th>
<th>Language</th>
<th>Download</th>
<th>Snapshots</th>
<th>Submitted by</th>
</tr>
</thead>
<tbody>
<tr>
<td style="text-align: left; vertical-align: middle;">QVox: A 3d volumetric data visualizer with some
homotopic thinning algorithms.</td>
<td style="text-align: left; vertical-align: middle;">---</td>
<td style="text-align: left; vertical-align: middle;">C</td>
<td style="text-align: left; vertical-align: middle;"><a href="http://qvox.sourceforge.net/">go</a></td>
<td style="text-align: left; vertical-align: middle;"><img src="DataSets/Code/Fourey/mvox_skull.gif"
width="100"></td>
<td style="text-align: left; vertical-align: middle; white-space: nowrap;"><a
href="mailto:[email protected]">S. Fourey</a></td>
</tr>
</tbody>
</table>
<hr style="margin:60px;">
<h3 style="margin:60px;"> Tools on the web </h3>
<a class="shiftedAnchor" name="tools"></a>
<ul>
<li> Visualization tools
</a>
<ul>
<li><a href="code.html#misc">QVox</a>: A 3d
volumetric data visualizer written by Sébastien Fourey (see the
TC18 code web page). </li>
<li> <a href="http://www.geomview.org/">Geomview</a>: an simple
interactive 3D viewing program for Unix. Major advantages are : easy to
use input format (close to VRML), postscript snapshots, export to VRML.
See the <a href="3D_images.html">3-D data code web page for snapshots.</a>
</li>
<li> <a href="http://www.web3d.org/">VRML</a>: web based
visualization tool. </li>
</ul>
</li>
<li> Computational Geometry tools
<ul>
<li> <a href="http://www.qhull.org/">qhull</a>
: Qhull computes convex hulls, Delaunay triangulations, halfspace
intersections about a point, Voronoi diagrams, furthest-site Delaunay
triangulations, and furthest-site Voronoi diagrams. It runs in 2-d,
3-d, 4-d, and higher dimensions. It implements the Quickhull algorithm
for computing the convex hull. Qhull handles roundoff errors from
floating point arithmetic. It computes volumes, surface areas, and
approximations to the convex hull. Export to <i>Geomview</i>
avaliable. </li>
<li> <a href="http://www.geom.uiuc.edu">Computational Geometry
center</a>: useful links and tools about computational geometry.
</li>
</ul>
</li>
</ul>
<h3>References</h3>
<ul>
<li><a id="BIB_Debled1995"></a>Debled-Rennesson, I., & Reveillès, J. P. (1995). A linear algorithm for
segmentation of digital curves. International Journal of Pattern Recognition and Artificial Intelligence,
9(04), 635-662.</li>
<li><a id="BIB_Even2019"></a>Even, P., Ngo, P., & Kerautret, B. (2019, September). Thick Line Segment
Detection with Fast Directional Tracking. In International Conference on Image Analysis and Processing (pp.
159-170). Springer, Cham.</li>
<li><a id="BIB_Fouard2005"></a>Fouard, C., & Malandain, G. (2005). 3-D chamfer distances and norms in
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