schema-40.2: Merge pull request #237 from dhardy/cleanup

Includes some cleanup and new --compress-output option.

Release builds have been adjusted slightly, hopefully resolving #224.

schema-40.1: Merge pull request #234 from dhardy/integration

Tweak integration parameters

Schema 40.0

PK/PD models

This release includes several changes made in collaboration with LSTM:

• Drug doses are stored internally as a quantity, not a concentration
• In the three-component model, A/B/C parameters are no longer pre-multiplied by the volume of distribution
• In the three-component model, k12, k21, k13, k31 parameters are no longer adjusted by body mass (requires updates to XML drug library)
• In the conversion model, (partial) covariance of IC50 between parent and metabolite drugs is now possible

(Log-)normal parametrisations

• Most log-normal models are now parametrised by mean value and coefficient of variation (CV).
• Decay function heterogeneity is now parametrised by CV
• distr="lnorm" is replaced with distr="lognormal" and required for use of log-normal sampling in most places
• distr="normal" is required for use of normal sampling (though not often available)
• revised parametrisation of relapses in Vivax model

Miscellaneous changes

• Simulation progress is now output to the standard error stream (cerr) instead of standard output (cout).
• Various code quality improvements in relation to switch to C++11

Experimental rebuild

Merge pull request #223 from dhardy/master

Fix Travis key and update README

Experimental rebuild

Test Travis uploads

Experimental rebuild

Merge pull request #221 from SwissTPH/ci

Travis: update access token

Experimental rebuild

Merge pull request #218 from SwissTPH/ci

Update AppVeyor configuration

Schema 39.1

Merge pull request #215 from SwissTPH/ic50

Ic50

Schema 39

Merge pull request #212 from SwissTPH/ver39

Update schema version to 39

schema-36.1.1

Bump version to schema-36.1.1