diff --git a/README.md b/README.md index 14ceb50..7d33d6b 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ Simulations and calculations on a compartmental model for *Plasmodium Vivax* dyn This code is associated with the following manuscripts: -- [Champagne C., Gerhards M. , Lana J., Le Menach A., Pothin E. **"Quantifying the impact of interventions against Plasmodium vivax malaria: a model for country-specific use"**](https://www.medrxiv.org/content/10.1101/2023.02.10.23285652v1). +- [Champagne C., Gerhards M. , Lana J., Le Menach A., Pothin E. **"Quantifying the impact of interventions against Plasmodium vivax malaria: a model for country-specific use"**, Epidemics 2024](https://doi.org/10.1016/j.epidem.2024.100747). The version used in this manuscript corresponds to the [main version](https://github.com/SwissTPH/VivaxModelR). It includes various control interventions, as detailed in the user [vignette](https://swisstph.github.io/VivaxModelR/articles/vivaxmodelr_delay.html). The scripts necessary to reproduce the manuscript figures are situated under [demo/figures_SimulatedExample](https://github.com/SwissTPH/VivaxModelR/tree/main/demo/figures_SimulatedExample). - [Champagne C., Gerhards M. , Lana J., García Espinosa B., Bradley C., González O., Cohen J.,Le Menach A., White M., Pothin E. **"Using observed incidence to calibrate the transmission level of a mathematical model for *Plasmodium vivax* dynamics including case management and importation"**, Mathematical Biosciences, 2021](https://www.sciencedirect.com/science/article/pii/S0025556421001541). diff --git a/vignettes/bibliography.json b/vignettes/bibliography.json index 342170c..8567d21 100644 --- a/vignettes/bibliography.json +++ b/vignettes/bibliography.json @@ -425,6 +425,60 @@ ] ] } + }, + { + "id": "champagne2024", + "type": "article-journal", + "abstract": "In order to evaluate the impact of various intervention strategies on Plasmodium vivax dynamics in low endemicity settings without significant seasonal pattern, we introduce a simple mathematical model that can be easily adapted to reported case numbers similar to that collected by surveillance systems in various countries. The model includes case management, vector control, mass drug administration and reactive case detection interventions and is implemented in both deterministic and stochastic frameworks. It is available as an R package to enable users to calibrate and simulate it with their own data. Although we only illustrate its use on fictitious data, by simulating and comparing the impact of various intervention combinations on malaria risk and burden, this model could be a useful tool for strategic planning, implementation and resource mobilization.", + "container-title": "Epidemics", + "DOI": "10.1016/j.epidem.2024.100747", + "ISSN": "1755-4365", + "journalAbbreviation": "Epidemics", + "page": "100747", + "source": "ScienceDirect", + "title": "Quantifying the impact of interventions against Plasmodium vivax: A model for country-specific use", + "title-short": "Quantifying the impact of interventions against Plasmodium vivax", + "URL": "https://www.sciencedirect.com/science/article/pii/S1755436524000082", + "author": [ + { + "family": "Champagne", + "given": "C." + }, + { + "family": "Gerhards", + "given": "M." + }, + { + "family": "Lana", + "given": "J." + }, + { + "family": "Le Menach", + "given": "A." + }, + { + "family": "Pothin", + "given": "E." + } + ], + "accessed": { + "date-parts": [ + [ + "2024", + 2, + 7 + ] + ] + }, + "issued": { + "date-parts": [ + [ + "2024", + 2, + 5 + ] + ] + } } ] diff --git a/vignettes/vivaxmodelr_delay.Rmd b/vignettes/vivaxmodelr_delay.Rmd index a103ca2..13c4a3e 100644 --- a/vignettes/vivaxmodelr_delay.Rmd +++ b/vignettes/vivaxmodelr_delay.Rmd @@ -11,7 +11,7 @@ vignette: > --- This package contains functions to simulate a compartmental model for Plasmodium Vivax and calculate the associated reproduction number for a given epidemiological setting, based on data on reported local and imported cases. -The model includes case management and vector control. +The model includes case management and vector control and is presented in @champagne2024. It is an extension of @white2016 and @champagne2022, and can be represented by the following diagram: