From c3397c3868d568429db7f742f000c62d093b5fcc Mon Sep 17 00:00:00 2001 From: Moray Smith <65286772+SwiftSeal@users.noreply.github.com> Date: Thu, 9 Jan 2025 13:19:35 +0000 Subject: [PATCH] benchmark table --- README.md | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 38770ae..18e8b96 100644 --- a/README.md +++ b/README.md @@ -294,9 +294,11 @@ As a result the `--retain` option doesn't have as much of a performance impact a The following are some quick benchmarks of the various `resistify` pipelines against the [DM potato genome](https://spuddb.uga.edu/data/DM_1-3_516_R44_potato.v6.1.hc_gene_models.pep.fa.gz) annotation, which contains 44,851 protein sequences. -| Pipeline | Resources | CPU time |Real time | MaxRSS | -| --- | --- | --- | --- | -- | -| nlr | 32T AMD EPYC 7543 | 05:14:47 | 0:12:42 | 15Gb | +| Pipeline | Resources | CPU time | Real time | MaxRSS | +| --- | --- | --- | --- | --- | +| `nlr` | 32T AMD EPYC 7543 | 05:14:47 | 00:12:42 | 15.0G | +| `nlr --coconat` | 32T AMD EPYC 7543 | 12:12:02 | 00:26:08 | 14.9G | +| `prr` | 16T AMD EPYC 7543, NVIDIA A100 80GB | 23:14:05 | 00:59:40 | 8.4G ## Contributing