pyproject.toml

[build-system]
requires = ["hatchling"]
build-backend = "hatchling.build"

[project]
name = "resistify"
version = "1.1.4"
dependencies = [
  "scikit-learn>=0.24.2",
  "numpy",
  "loguru",
  "torch",
  "fair-esm",
  "transformers",
  "sentencepiece",
  "threadpoolctl",
]
authors = [
  { name="Moray Smith", email="moraysmith98@gmail.com" },
]
description = "A resistance gene annotation tool"
readme = "README.md"
requires-python = ">=3.9,<3.13"
classifiers = [
    "Programming Language :: Python :: 3",
    "License :: OSI Approved :: GNU General Public License v3 (GPLv3)",
    "Operating System :: OS Independent",
]

[project.optional-dependencies]
test = ["pytest"]

[project.scripts]
resistify = "resistify.main:main"

[tool.hatch.build]
include = [
  "resistify",
]

[tool.pixi.project]
channels = ["conda-forge", "bioconda"]
platforms = ["linux-64", "osx-arm64"]

[tool.pixi.pypi-dependencies]
resistify = { path = ".", editable = true }

[tool.pixi.dependencies]
hmmer = ">=3.4,<4"

[tool.pixi.environments]
default = {features = [], solve-group = "default"}
test = {features = ["test"], solve-group = "default"}